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SCNpilot_cont_500_bf_scaffold_16028

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_16028_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..200)
DNA (198bp) protein (66aa)
Cell division protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DH57_BRAJP
ftsK; cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
DNA translocase {ECO:0000313|EMBL:AHY55717.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_500_bf_scaffold_16028_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(228..905)
DNA (678bp) protein (226aa)
Aminotransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13E06_RHOPS
Diaminopimelate aminotransferase {ECO:0000313|EMBL:ETR77807.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
class I and II aminotransferase
SCNpilot_cont_500_bf_scaffold_16028_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1699..3030)
DNA (1332bp) protein (444aa)
Ammonium transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS12_NITHX
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_16028_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3071..3397)
DNA (327bp) protein (109aa)
Regulatory protein (P-II 2) for nitrogen assimilation, regulates GlnL (NRII), GlnE (ATase), and AmtB (Ammonium transporter) n=2 Tax=Bradyrhizobium RepID=H0SS16_9BRAD
Regulatory protein (P-II 2) for nitrogen assimilation, regulates GlnL (NRII), GlnE (ATase), and AmtB (Ammonium transporter) {ECO:0000313|EMBL:CCE09046.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
regulatory protein (P-II 2) for nitrogen assimilation
SCNpilot_cont_500_bf_scaffold_16028_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3637..4086)
DNA (450bp) protein (150aa)
cyclic nucleotide-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DB596F
Bradyrhizobium elkanii strain UASWS1015 Contig171, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50124.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative Crp/Fnr family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_16028_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4143..4829)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWI6_NITWN rbh
transcriptional regulatory protein rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABA03355.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_16028_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5026..5586
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J367_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD05093.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_500_bf_scaffold_16028_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5704..6126)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIG8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09059.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_16028_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6294..7355)
DNA (1062bp) protein (354aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDL1_BRAJP
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AHY56002.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_500_bf_scaffold_16028_10
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7490..7969
DNA (480bp) protein (160aa)
Putrescine transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GZ87_9BRAD
AsnC family transcriptional regulator {ECO:0000313|EMBL:KJC57463.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
AsnC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_16028_11
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8130..9338)
DNA (1209bp) protein (403aa)
fahA; fumarylacetoacetate hydrolase (EC:3.7.1.2); K01555 fumarylacetoacetase [EC:3.7.1.2]
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ABQ32845.1}; EC=3.7.1.2 {ECO:0000313|EMBL:ABQ32845.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Fumarylacetoacetate hydrolase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E9K1_BRASB
SCNpilot_cont_500_bf_scaffold_16028_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9503..10126)
DNA (624bp) protein (208aa)
homogentisate 1,2-dioxygenase; K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5]
Homogentisate 1,2-dioxygenase {ECO:0000255|HAMAP-Rule:MF_00334}; Short=HGDO {ECO:0000255|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000255|HAMAP-Rule:MF_00334};; Homogentisate oxygenase {ECO:0000255|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000255|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000255|HAMAP-Rule:MF_00334}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CG
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=HGD_RHOPA
Displaying 12 items

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