ggKbase home page

SCNpilot_cont_500_bf_scaffold_479

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_479_1
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..878)
DNA (876bp) protein (292aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y733_KETVW rbh
TRAP dicarboxylate transporter subunit DctP rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:AEM42223.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_cont_500_bf_scaffold_479_2
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(891..1784)
DNA (894bp) protein (298aa)
Transcriptional regulator, IclR family/regucalcin n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7Z7_PELHB rbh
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family/regucalcin {ECO:0000313|EMBL:AEQ50292.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_500_bf_scaffold_479_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1781..2695)
DNA (915bp) protein (305aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
UPI0003D01CC9 related cluster n=1 Tax=unknown RepID=UPI0003D01CC9
SCNpilot_cont_500_bf_scaffold_479_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2834..3517
DNA (684bp) protein (228aa)
UPI0003CFD7F8 related cluster n=1 Tax=unknown RepID=UPI0003CFD7F8 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB85193.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
transcriptional regulator, TetR family
SCNpilot_cont_500_bf_scaffold_479_5
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3992..6946
DNA (2955bp) protein (985aa)
DNA polymerase I {ECO:0000313|EMBL:EFM58722.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFM58722.1};; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D24E6
SCNpilot_cont_500_bf_scaffold_479_6
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7121..7915
DNA (795bp) protein (265aa)
High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T894_9BRAD
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:GAJ37564.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
high-affinity branched-chain amino acid transport protein, ABC superfamily, ATP-binding
SCNpilot_cont_500_bf_scaffold_479_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7912..8625
DNA (714bp) protein (238aa)
livF; high-affinity branched-chain amino acid transport protein (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P097_9BRAD
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_cont_500_bf_scaffold_479_8
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8631..9506
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133F9_RHOPS
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:GAJ37566.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_479_9
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9508..10527
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NQ89_9BRAD
High-affinity branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:GAJ37567.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_479_10
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10545..11768
DNA (1224bp) protein (408aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003647FD6
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EIG60936.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_479_11
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11817..12632)
DNA (816bp) protein (272aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium loti RepID=UPI00036EA522
SCNpilot_cont_500_bf_scaffold_479_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12729..13190)
DNA (462bp) protein (154aa)
hypothetical protein; K00389 putative membrane protein id=14429984 bin=bin3_NC10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
SCNpilot_cont_500_bf_scaffold_479_13
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13276..13899)
DNA (624bp) protein (208aa)
Esterase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YYP1_9RHIZ
Esterase {ECO:0000313|EMBL:ERI15766.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
SCNpilot_cont_500_bf_scaffold_479_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13911..14840)
DNA (930bp) protein (310aa)
Aromatic compounds dioxygenase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AFZ2_RHIRD
Dioxygenase {ECO:0000313|EMBL:EPR21592.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
aromatic compounds dioxygenase
SCNpilot_cont_500_bf_scaffold_479_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15110..16447)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036AFF9C
Uncharacterized protein {ECO:0000313|EMBL:EZQ13670.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_479_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16563..17900
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374F3BB
Uncharacterized protein {ECO:0000313|EMBL:EZQ13667.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_479_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17890..19266
DNA (1377bp) protein (459aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF5_METCA
Uncharacterized protein {ECO:0000313|EMBL:EZQ13668.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
glycosyl transferase group 1 family protein
SCNpilot_cont_500_bf_scaffold_479_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19183..20508)
DNA (1326bp) protein (442aa)
Uncharacterized protein {ECO:0000313|EMBL:EZQ13672.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Polysaccharide biosynthesis protein id=4824969 bin=GWC2_Nitrospirae-rel_56_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
polysaccharide biosynthesis protein
SCNpilot_cont_500_bf_scaffold_479_19
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20779..22257
DNA (1479bp) protein (493aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09188.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_479_20
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

22254..23054
DNA (801bp) protein (267aa)
Exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CQR0_9BRAD
WecB/TagA/CpsF family glycosyl transferase
Tax=RBG_16_Zixibacteria_53_22_curated
SCNpilot_cont_500_bf_scaffold_479_21
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23062..24318)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378E23E
glycosyl transferase
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
SCNpilot_cont_500_bf_scaffold_479_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24536..26461
DNA (1926bp) protein (642aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D2CAB9
Uncharacterized protein {ECO:0000313|EMBL:EZQ13673.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
lipopolysaccharide biosynthesis protein
SCNpilot_cont_500_bf_scaffold_479_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26809..28587
DNA (1779bp) protein (593aa)
Putative hydrolase of the alpha/beta superfamily n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7C7_9RHIZ rbh
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EYR77465.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydrolase of the alpha/beta superfamily
SCNpilot_cont_500_bf_scaffold_479_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28607..29254)
DNA (648bp) protein (216aa)
NADP oxidoreductase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A59CB6
Predicted dinucleotide-binding enzymes {ECO:0000313|EMBL:CDP51318.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
coenzyme F420-dependent NADP oxidoreductase; K06988
SCNpilot_cont_500_bf_scaffold_479_25
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29238..30308)
DNA (1071bp) protein (357aa)
luciferase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A67862 rbh
Luciferase {ECO:0000313|EMBL:KGJ16943.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
luciferase-like monooxygenase rbh
SCNpilot_cont_500_bf_scaffold_479_26
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30437..30814
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTV8_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35886.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_479_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30835..31953)
DNA (1119bp) protein (373aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN6_9RHIZ rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EYR84173.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_479_28
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32233..33381
DNA (1149bp) protein (383aa)
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GZ9_MESSB rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABG63326.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_479_29
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33503..35011
DNA (1509bp) protein (503aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
catalase; K03781 catalase [EC:1.11.1.6] rbh
catalase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003746FA4 rbh
SCNpilot_cont_500_bf_scaffold_479_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35291..35776)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHP6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP54115.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
Displaying items 1-30 of 92 in total

View Taxonomy