ggKbase home page

SCNpilot_cont_500_bf_scaffold_711

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_711_trna_1
unknown

Not on your lists

1..72
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_711_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(187..390)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003769D1B
Uncharacterized protein {ECO:0000313|EMBL:EXL01821.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_711_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(504..713)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y7L7_MESOW
Uncharacterized protein {ECO:0000313|EMBL:CDX27859.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_711_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(753..986)
DNA (234bp) protein (78aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FFW1_9RHIZ
UPF0391 membrane protein X759_24195 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Protein of unknown function (DUF1328)
SCNpilot_cont_500_bf_scaffold_711_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1033..2289)
DNA (1257bp) protein (419aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNN4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57687.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_711_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2376..3602)
DNA (1227bp) protein (409aa)
Lytic murein transglycosylase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNN5_9RHIZ
Lytic murein transglycosylase {ECO:0000313|EMBL:EHK57688.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
lytic murein transglycosylase
SCNpilot_cont_500_bf_scaffold_711_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3858..4763
DNA (906bp) protein (302aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNN6_9RHIZ
SCNpilot_cont_500_bf_scaffold_711_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4902..6668)
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003718B58
Uncharacterized protein {ECO:0000313|EMBL:CCV16083.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_711_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6853..7851
DNA (999bp) protein (333aa)
D-arabinose 5-phosphate isomerase {ECO:0000313|EMBL:CCV16081.1}; EC=5.3.1.13 {ECO:0000313|EMBL:CCV16081.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
KpsF/GutQ family protein (EC:5.3.1.13)
D-arabinose 5-phosphate isomerase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIA1_9RHIZ
SCNpilot_cont_500_bf_scaffold_711_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7855..8316)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PMT1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42392.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein; K07340 hypothetical protein
SCNpilot_cont_500_bf_scaffold_711_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8323..9279)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4U4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF42391.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_711_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9371..10429)
DNA (1059bp) protein (353aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hemH; ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Nitratireductor indicus C115 RepID=K2NSR3_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_711_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10520..11530)
DNA (1011bp) protein (337aa)
5'-nucleotidase {ECO:0000313|EMBL:CDX32032.1}; EC=3.1.3.5 {ECO:0000313|EMBL:CDX32032.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
5'-nucleotidase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFJ3_9RHIZ
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase
SCNpilot_cont_500_bf_scaffold_711_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11476..12594)
DNA (1119bp) protein (373aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase {ECO:0000313|EMBL:ACP26595.1}; EC=3.1.3.5 {ECO:0000313|EMBL:ACP26595.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
5''''-nucleotidase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003642F98
SCNpilot_cont_500_bf_scaffold_711_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12642..13895)
DNA (1254bp) protein (418aa)
Phenylacetate-CoA ligase; K01912 phenylacetate-CoA ligase [EC:6.2.1.30]
Phenylacetate-CoA ligase n=1 Tax=Nitratireductor indicus C115 RepID=K2NSQ1_9RHIZ rbh
Phenylacetate-CoA ligase {ECO:0000313|EMBL:EKF42375.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_500_bf_scaffold_711_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13970..14344)
DNA (375bp) protein (125aa)
Outer membrane lipoprotein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MYR8_9RHIZ
Outer membrane lipoprotein {ECO:0000313|EMBL:EKF17108.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
outer membrane lipoprotein
SCNpilot_cont_500_bf_scaffold_711_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14450..15895)
DNA (1446bp) protein (482aa)
homospermidine synthase; K00808 homospermidine synthase [EC:2.5.1.44]
Homospermidine synthase {ECO:0000313|EMBL:ABG64104.1}; EC=2.5.1.44 {ECO:0000313|EMBL:ABG64104.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Homospermidine synthase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ES1_MESSB
SCNpilot_cont_500_bf_scaffold_711_17
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..16912)
DNA (924bp) protein (308aa)
UPI0003D04226 related cluster n=1 Tax=unknown RepID=UPI0003D04226
Uncharacterized protein {ECO:0000313|EMBL:ESZ29181.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Protein of unknown function (DUF3445)
SCNpilot_cont_500_bf_scaffold_711_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16931..17599)
DNA (669bp) protein (223aa)
hypothetical protein; K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
UPI0003D01164 related cluster n=1 Tax=unknown RepID=UPI0003D01164
Uncharacterized protein {ECO:0000313|EMBL:CDX11339.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_cont_500_bf_scaffold_711_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17548..18759)
DNA (1212bp) protein (404aa)
Aminodeoxychorismate synthase {ECO:0000313|EMBL:EHK57703.1}; EC=2.6.1.85 {ECO:0000313|EMBL:EHK57703.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
para-aminobenzoate synthase subunit I; K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
aminodeoxychorismate synthase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E8A08 rbh
SCNpilot_cont_500_bf_scaffold_711_20
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18809..20662)
DNA (1854bp) protein (618aa)
oligoendopeptidase; K08602 oligoendopeptidase F [EC:3.4.24.-]
Oligoendopeptidase, pepF/M3 family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI83_9RHIZ
Oligoendopeptidase, pepF/M3 family {ECO:0000313|EMBL:CCV16070.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_500_bf_scaffold_711_21
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20811..22319
DNA (1509bp) protein (503aa)
Sigma-54 factor interaction domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y2C2_9RHIZ
Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:EHH14105.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
sigma-54 factor interaction domain-containing protein
SCNpilot_cont_500_bf_scaffold_711_22
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22533..24266
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TEV9_MESCW
hypothetical protein
Peptidase M15 {ECO:0000313|EMBL:ESY88539.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_cont_500_bf_scaffold_711_23
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24288..24929)
DNA (642bp) protein (214aa)
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:EIM74644.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EIM74644.1};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] rbh
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BYJ2_9RHIZ
SCNpilot_cont_500_bf_scaffold_711_24
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25009..25911)
DNA (903bp) protein (301aa)
Peptidoglycan-binding domain 1 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ER4_MESSB
Peptidoglycan-binding protein {ECO:0000313|EMBL:EZQ16420.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
peptidoglycan binding domain-containing protein
SCNpilot_cont_500_bf_scaffold_711_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26087..27016
DNA (930bp) protein (310aa)
UPI0003CED007 related cluster n=1 Tax=unknown RepID=UPI0003CED007
UPF0176 protein MPLDJ20_60484 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Rhodanese domain-containing protein; K07146 UPF0176 protein
SCNpilot_cont_500_bf_scaffold_711_26
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27128..27826
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNR2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX11357.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_711_27
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28234..28980
DNA (747bp) protein (249aa)
Molybdenum ABC transporter periplasmic molybdenum-binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LGV6_9RHIZ
Molybdenum ABC transporter periplasmic molybdenum-binding protein {ECO:0000313|EMBL:EKF17019.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
molybdenum ABC transporter, periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_711_28
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28988..29668
DNA (681bp) protein (227aa)
Molybdate ABC transporter permease protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MYG5_9RHIZ
Molybdate ABC transporter permease protein {ECO:0000313|EMBL:EKF17018.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
modB; molybdate ABC transporter permease; K02018 molybdate transport system permease protein
SCNpilot_cont_500_bf_scaffold_711_29
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29668..30777
DNA (1110bp) protein (370aa)
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
molybdate ABC transporter ATPase; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29]
Molybdenum ABC transporter ATP-binding protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BYI3_9RHIZ rbh
Displaying items 1-30 of 97 in total

View Taxonomy