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SCNpilot_cont_500_bf_scaffold_1449

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1449_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..798
DNA (798bp) protein (266aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
ornithine cyclodeaminase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B38696
Ornithine cyclodeaminase/mu-crystallin family protein {ECO:0000313|EMBL:ACP27150.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_500_bf_scaffold_1449_2
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(872..1528)
DNA (657bp) protein (219aa)
Putative transcriptional regulator n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I3I3_9BRAD
Putative transcriptional regulator {ECO:0000313|EMBL:EJN13903.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1449_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1698..2333)
DNA (636bp) protein (212aa)
Urea carboxylase-associated protein 1 id=1766117 bin=GWD2_Deltaproteobacteria_55_8 species=Pantoea sp. Sc1 genus=Pantoea taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein; K09967 hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
SCNpilot_cont_500_bf_scaffold_1449_4
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2369..3064)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein (Fragment) n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GB81_9ACTN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA90445.1}; Flags: Fragment;; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ABC transporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1449_5
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3051..5789)
DNA (2739bp) protein (913aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003802C05 rbh
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJM11267.1}; Flags: Precursor;; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1449_6
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5874..7001)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000378FD08 rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Tax=GWC2_RIF_CHLX_73_18_curated
SCNpilot_cont_500_bf_scaffold_1449_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7146..8381)
DNA (1236bp) protein (412aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EZQ12563.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EZQ12563.1};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aminotransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C80_MESSB rbh
SCNpilot_cont_500_bf_scaffold_1449_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8392..9903)
DNA (1512bp) protein (504aa)
UPI0003CDFE23 related cluster n=1 Tax=unknown RepID=UPI0003CDFE23
Aldehyde dehydrogenase {ECO:0000313|EMBL:EZQ14095.1}; Flags: Fragment;; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
aldehyde dehydrogenase
SCNpilot_cont_500_bf_scaffold_1449_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9928..11343)
DNA (1416bp) protein (472aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDA6_9RHIZ rbh
FAD/FMN-containing dehydrogenase {ECO:0000313|EMBL:EYR78974.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
D-lactate dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_1449_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11349..12743)
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C78_MESSB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABG64997.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_1449_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12869..13804
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=2 Tax=Rhizobium fredii RepID=G9A3I1_RHIFH
ampr3; LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCE97929.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_1449_12
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13873..15177
DNA (1305bp) protein (435aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VY80_9RHIZ
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJN05200.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_1449_13
Pseudomonas sp. CFII64, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15444..16706
DNA (1263bp) protein (421aa)
peptidase M20; K01438 acetylornithine deacetylase [EC:3.5.1.16]
Peptidase M20 n=1 Tax=Pseudomonas sp. CFII64 RepID=S6ITP1_9PSED
Peptidase M20 {ECO:0000313|EMBL:EPJ84738.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
SCNpilot_cont_500_bf_scaffold_1449_14
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16737..17765
DNA (1029bp) protein (343aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CC48_9BURK
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EJN02704.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
SCNpilot_cont_500_bf_scaffold_1449_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

17854..18705
DNA (852bp) protein (284aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000381F15F
ABC spermidine/putrescine transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_cont_500_bf_scaffold_1449_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18838..19422
DNA (585bp) protein (195aa)
Putative inner membrane component of binding-protein-dependent transport system id=3780578 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_cont_500_bf_scaffold_1449_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19419..20552
DNA (1134bp) protein (378aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putrescine ABC transporter ATP-binding protein; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
ABC transporter n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI00037337FF
SCNpilot_cont_500_bf_scaffold_1449_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20601..21392)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEL4_AGRSH
Strain MEJ076 contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ04100.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1449_19
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21447..22145)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000362D098
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY66016.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_1449_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22157..22912)
DNA (756bp) protein (252aa)
dehydrogenase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:KJX85702.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KJX85702.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Dehydrogenase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CVC9_AGRT5 rbh
SCNpilot_cont_500_bf_scaffold_1449_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22982..23968)
DNA (987bp) protein (329aa)
sulfonate ABC transporter substrate-binding protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003808AFB rbh
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:CDN95354.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative sulfonate/nitrate transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1449_22
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24011..24814)
DNA (804bp) protein (268aa)
ABC transporter, membrane spanning protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEK9_AGRSH rbh
ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:ADY66013.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_1449_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24937..25740
DNA (804bp) protein (268aa)
ABC transporter ATPase (EC:3.6.3.31); K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter ATP-binding protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003657530
ABC transporter, nucleotide binding/ATPase protein {ECO:0000313|EMBL:CDN95356.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_1449_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25744..26535
DNA (792bp) protein (264aa)
IclR family transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000369C0ED rbh
IclR family transcriptional regulator rbh
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:KJX85706.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_1449_25

Not on your lists

26698..27516
DNA (819bp) protein (273aa)
glycosyl transferase family 25 n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2ABDE
Uncharacterized protein {ECO:0000313|EMBL:KKN26657.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycosyl transferase
SCNpilot_cont_500_bf_scaffold_1449_26
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27513..28442
DNA (930bp) protein (310aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX33950.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_cont_500_bf_scaffold_1449_27
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28429..29301
DNA (873bp) protein (291aa)
Alpha (1-4)-galactosyltransferase n=2 Tax=Moraxella catarrhalis RepID=B9TXV4_MORCA
Alpha (1-4)-galactosyltransferase {ECO:0000313|EMBL:CDX17435.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
lgt5; galactosyltransferase Lgt5
SCNpilot_cont_500_bf_scaffold_1449_28
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29391..30368
DNA (978bp) protein (326aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TW67_9RHIZ rbh
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ENN84689.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nucleoside-diphosphate-sugar epimerase rbh
SCNpilot_cont_500_bf_scaffold_1449_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30365..31339
DNA (975bp) protein (325aa)
UDP-glucose 4-epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U2X4_9RHIZ rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ENN84688.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
UDP-glucose-4-epimerase rbh
SCNpilot_cont_500_bf_scaffold_1449_30
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31336..32559)
DNA (1224bp) protein (408aa)
UPI0003CFB119 related cluster n=1 Tax=unknown RepID=UPI0003CFB119 rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:ESY95772.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
glycosyltransferase rbh
Displaying items 1-30 of 36 in total

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