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SCNpilot_cont_500_bf_scaffold_1647

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1647_trna_1
unknown

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6..79
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1647_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..1988)
DNA (1815bp) protein (605aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ABE64169.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABE64169.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ATP-dependent DNA helicase RecQ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHX8_NITHX
SCNpilot_cont_500_bf_scaffold_1647_2
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2052..3080)
DNA (1029bp) protein (343aa)
UPI0003CF55D9 related cluster n=1 Tax=unknown RepID=UPI0003CF55D9
Acetylpolyamine aminohydrolase {ECO:0000313|EMBL:ESY13952.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
histone deacetylase superfamily protein
SCNpilot_cont_500_bf_scaffold_1647_3
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3107..4042)
DNA (936bp) protein (312aa)
ornithine cyclodeaminase/mu-crystallin; K01750 ornithine cyclodeaminase [EC:4.3.1.12] rbh
Ornithine cyclodeaminase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B196_PARDP rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:KFF49402.1}; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
SCNpilot_cont_500_bf_scaffold_1647_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4054..4401)
DNA (348bp) protein (116aa)
Endoribonuclease L-PSP n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5J3_POLGS
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ADZ72363.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_1647_5
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4518..6035)
DNA (1518bp) protein (506aa)
Malonyl-CoA synthase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJF9_9RHOB rbh
Malonyl-CoA synthase {ECO:0000313|EMBL:EAP77490.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
malonyl-CoA synthase
SCNpilot_cont_500_bf_scaffold_1647_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6016..7362)
DNA (1347bp) protein (449aa)
hypothetical protein; K01578 malonyl-CoA decarboxylase [EC:4.1.1.9] rbh
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WYH2_RHOS5 rbh
Putative decarboxylase {ECO:0000313|EMBL:CDX51610.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_500_bf_scaffold_1647_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7359..8675)
DNA (1317bp) protein (439aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6B5_9BRAD rbh
dctM2; TRAP dicarboxylate transporter subunit DctM rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_1647_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8672..9211)
DNA (540bp) protein (180aa)
TRAP dicarboxylate transporter, DctQ subunit n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8K7_9RHOB
tripartite ATP-independent periplasmic transporter DctQ
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_1647_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9482..10477)
DNA (996bp) protein (332aa)
TRAP transporter solute receptor n=1 Tax=Rhodovulum sp. PH10 RepID=J6IWW5_9RHOB
extracellular solute-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_cont_500_bf_scaffold_1647_10
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10621..11298
DNA (678bp) protein (226aa)
Regulatory protein GntR, HTH:GntR, C-terminal n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V736_9RHOB
Regulatory protein GntR, HTH:GntR, C-terminal {ECO:0000313|EMBL:EAQ06052.1}; TaxID=314232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1647_11
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11374..12246
DNA (873bp) protein (291aa)
aldose 1-epimerase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037DFA08
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:ACA17594.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_1647_12
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12253..13032
DNA (780bp) protein (260aa)
Periplasmic binding protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S7L8_9RHOB rbh
Periplasmic binding protein {ECO:0000313|EMBL:EPX82234.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
substrate-binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1647_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13087..13323
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4E9_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89812.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_1647_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13396..13935
DNA (540bp) protein (180aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F122_9RHIZ
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:CCV10046.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
RNA polymerase sigma factor, sigma-70 family
SCNpilot_cont_500_bf_scaffold_1647_15
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13932..14663
DNA (732bp) protein (244aa)
UPI0003CF9842 related cluster n=1 Tax=unknown RepID=UPI0003CF9842
Anti-sigma K factor RskA {ECO:0000313|EMBL:ESY68111.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
Anti-sigma K factor RskA
SCNpilot_cont_500_bf_scaffold_1647_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14770..15333
DNA (564bp) protein (188aa)
Beta-Ig-H3/fasciclin n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y5J7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX34252.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
beta-Ig-H3/fasciclin
SCNpilot_cont_500_bf_scaffold_1647_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15587..16096
DNA (510bp) protein (170aa)
methionine-R-sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Methionine-R-sulfoxide reductase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N989_9RHIZ
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EKF20673.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_500_bf_scaffold_1647_18
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16240..17832)
DNA (1593bp) protein (531aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VF16_9RHIZ
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJN04547.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
EmrB/QacA family drug resistance transporter
SCNpilot_cont_500_bf_scaffold_1647_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17866..19047)
DNA (1182bp) protein (394aa)
Multidrug resistance efflux pump n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KEI8_MESAW
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGB42930.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Displaying 20 items

View Taxonomy