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SCNpilot_cont_500_bf_scaffold_1748

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1748_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..297)
DNA (297bp) protein (99aa)
UPI0003CE1E10 related cluster n=1 Tax=unknown RepID=UPI0003CE1E10
DNA-binding protein {ECO:0000313|EMBL:ESW80111.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ofn31; hypothetical protein
SCNpilot_cont_500_bf_scaffold_1748_2
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(294..560)
DNA (267bp) protein (89aa)
UPI0003CF5498 related cluster n=1 Tax=unknown RepID=UPI0003CF5498
Transcriptional regulator {ECO:0000313|EMBL:ESW80110.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ofn32; hypothetical protein
SCNpilot_cont_500_bf_scaffold_1748_3
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(692..1039)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003656D66
hypothetical protein; K09137 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK80104.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
SCNpilot_cont_500_bf_scaffold_1748_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1050..1424)
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=3 Tax=Acidiphilium RepID=A5FV99_ACICJ
CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_500_bf_scaffold_1748_5
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1427..2098)
DNA (672bp) protein (224aa)
Putative DNA mismatch repair protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CAU6_METED
Mismatch repair ATPase (MutS family) {ECO:0000313|EMBL:CCH76052.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
DNA mismatch repair protein
SCNpilot_cont_500_bf_scaffold_1748_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2405..3103
DNA (699bp) protein (233aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BXQ7_9RHIZ rbh
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EIM74359.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Crp/Fnr family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1748_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..7276)
DNA (4173bp) protein (1391aa)
Cytochrome P450 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVK9_9RHIZ rbh
Cytochrome P450 {ECO:0000313|EMBL:EHK55226.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
cytochrome P450 rbh
SCNpilot_cont_500_bf_scaffold_1748_8
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7368..9113)
DNA (1746bp) protein (582aa)
Adenylate cyclase (EC:4.6.1.1) rbh
Adenylate cyclase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZ37_9RHIZ rbh
Adenylate cyclase {ECO:0000313|EMBL:EIM74839.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_cont_500_bf_scaffold_1748_9
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9266..10078
DNA (813bp) protein (271aa)
Putative transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZ36_9RHIZ rbh
Putative transcriptional regulator {ECO:0000313|EMBL:EIM74838.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
two component transcriptional regulator, LuxR family
SCNpilot_cont_500_bf_scaffold_1748_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10333..10788)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E9D72D
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
UspA domain-containing protein
SCNpilot_cont_500_bf_scaffold_1748_11
unknown

Not on your lists

11197..11388
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1748_12
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11585..12847)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q5C0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KEQ07837.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1748_13
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13187..14008
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031FF6D9 rbh
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:GAK72979.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1748_14
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13977..14978
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F5C437 rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAK72980.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
basic membrane lipoprotein; K07335 basic membrane protein A and related proteins rbh
SCNpilot_cont_500_bf_scaffold_1748_15
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14990..16528
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00035D1E43
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAK72981.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1748_16
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16525..17583
DNA (1059bp) protein (353aa)
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK72982.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein id=14632587 bin=bin9_gal15 species=Halanaerobium praevalens genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15 rbh
amino acid transporter
SCNpilot_cont_500_bf_scaffold_1748_17
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17580..18476
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030874CA rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK72983.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_1748_18
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18479..19042
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E936E1
Isochorismatase family protein {ECO:0000313|EMBL:GAK72984.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
isochorismatase hydrolase
SCNpilot_cont_500_bf_scaffold_1748_19
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19039..19920
DNA (882bp) protein (294aa)
rbsK; ribokinase; K00852 ribokinase [EC:2.7.1.15]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7D949
Uncharacterized protein {ECO:0000313|EMBL:GAK72985.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCNpilot_cont_500_bf_scaffold_1748_20
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19917..20666
DNA (750bp) protein (250aa)
purine or other phosphorylase family 1; K00757 uridine phosphorylase [EC:2.4.2.3]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E2E0C8
Uridine phosphorylase {ECO:0000313|EMBL:GAK72986.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCNpilot_cont_500_bf_scaffold_1748_21
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20701..21468
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D945FF rbh
Uncharacterized protein {ECO:0000313|EMBL:GAK72987.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1748_22
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21472..22920
DNA (1449bp) protein (483aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003816CCC rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAK72988.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCNpilot_cont_500_bf_scaffold_1748_23
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22990..23778)
DNA (789bp) protein (263aa)
ABC-type nitrate/sulfonate/taurine/bicarbonate transport system-like protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9Q5V5_9RHOB
ABC-type nitrate/sulfonate/taurine/bicarbonate transport system-like protein {ECO:0000313|EMBL:EPX75432.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
nitrate/sulfonate/bicarbonate ABC transporter permease
SCNpilot_cont_500_bf_scaffold_1748_24
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23780..24556)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003746915
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AID33472.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
binding-protein-dependent transporters inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_1748_25
Methanobrevibacter ruminantium, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24553..25548)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036E63AD
btcC; bicarbonate ABC transporter substrate-binding protein BtcC; K02051 NitT/TauT family transport system substrate-binding protein
Bicarbonate ABC transporter substrate-binding protein BtcC {ECO:0000313|EMBL:ADC46800.1}; TaxID=634498 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM; 13430 / M1) (Methanobacterium ruminantium).;"
SCNpilot_cont_500_bf_scaffold_1748_26
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25592..26785)
DNA (1194bp) protein (398aa)
Bile acid-CoA hydrolase {ECO:0000313|EMBL:KJF22674.1}; EC=3.1.2.26 {ECO:0000313|EMBL:KJF22674.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
Acyl-CoA transferase/carnitine dehydratase id=4790533 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA transferase/carnitine dehydratase
SCNpilot_cont_500_bf_scaffold_1748_27
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26782..27144)
DNA (363bp) protein (121aa)
TauT family taurine ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FW91_9BURK
TauT family taurine ABC transporter permease {ECO:0000313|EMBL:EOA05803.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1748_28
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27087..27506)
DNA (420bp) protein (140aa)
ABC transporter related protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RXF0_HALTV
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADB61674.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 /; VKM B-1734) (Halococcus turkmenicus).;"
SCNpilot_cont_500_bf_scaffold_1748_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(27559..28389)
DNA (831bp) protein (277aa)
Binding-protein-dependent transport system inner membrane protein id=4051065 bin=GWF2_Methylomirabilis_70_14 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_cont_500_bf_scaffold_1748_30
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28386..29186)
DNA (801bp) protein (267aa)
ABC transporter related protein n=1 Tax=Ralstonia sp. PBA RepID=I9W2C0_9RALS
ABC transporter related protein {ECO:0000313|EMBL:EIZ02577.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
Displaying items 1-30 of 32 in total

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