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SCNpilot_cont_500_bf_scaffold_8334

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8334_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..324
DNA (324bp) protein (108aa)
4-hydroxybenzoate 3-monooxygenase; K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
P-hydroxybenzoate hydroxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI54_9BRAD
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:EKS33464.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_500_bf_scaffold_8334_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

484..930
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6Z1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34173.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phenylacetic acid degradation-related protein
SCNpilot_cont_500_bf_scaffold_8334_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(995..1876)
DNA (882bp) protein (294aa)
LysR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI000319660E
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGP09255.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_8334_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1980..2219
DNA (240bp) protein (80aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Afipia birgiae RepID=UPI0002FB5500
Uncharacterized protein {ECO:0000313|EMBL:EKS34176.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07006
SCNpilot_cont_500_bf_scaffold_8334_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2228..2500
DNA (273bp) protein (91aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Afipia birgiae RepID=UPI0002FB5500
Uncharacterized protein {ECO:0000313|EMBL:EKS33461.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pyridoxamine 5'-phosphate oxidase-related, FMN-binding; K07006
SCNpilot_cont_500_bf_scaffold_8334_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2509..3237)
DNA (729bp) protein (243aa)
glutathione S-transferase n=1 Tax=Afipia birgiae RepID=UPI00035E45C2 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33460.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
glutathione S-transferase
SCNpilot_cont_500_bf_scaffold_8334_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3342..4049
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6Z8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34178.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8334_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4046..4351
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F9EA3B
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46808.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K06940
SCNpilot_cont_500_bf_scaffold_8334_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4369..4773)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W3E1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ44263.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8334_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4913..5794)
DNA (882bp) protein (294aa)
dhaA_1; haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NV36_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34182.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_500_bf_scaffold_8334_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5810..6247)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216C7_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ44277.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8334_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6301..7056)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQF6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61541.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_8334_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7008..7745)
DNA (738bp) protein (246aa)
Cyclic nucleotide-binding protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133B5_RHOPS
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ABE40824.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_8334_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7891..8679
DNA (789bp) protein (263aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55); K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
Blr7857 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CE0_BRADU
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:KIZ44269.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_8334_15
unknown

Not on your lists

comp(8693..8983)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8334_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9071..9793)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I8A7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF79690.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
nitroreductase
SCNpilot_cont_500_bf_scaffold_8334_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9795..10217)
DNA (423bp) protein (141aa)
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:CAE27151.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CAE27151.1};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
Acyl-CoA dehydrogenase domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VGY2_RHOPX
acyl-CoA dehydrogenase domain-containing protein
Displaying 17 items

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