ggKbase home page

SCNpilot_cont_500_bf_scaffold_3027

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3027_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..551)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003757BF4
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45872.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_3027_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

768..1268
DNA (501bp) protein (167aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010603}; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010679};; Xanthine-guanine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
xanthine-guanine phosphoribosyltransferase; K00769 xanthine phosphoribosyltransferase [EC:2.4.2.22]
Xanthine phosphoribosyltransferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MU78_9RHIZ
SCNpilot_cont_500_bf_scaffold_3027_3
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1462..1953
DNA (492bp) protein (164aa)
UPI0003CE5A7C related cluster n=1 Tax=unknown RepID=UPI0003CE5A7C
NUDIX hydrolase {ECO:0000313|EMBL:ESY84040.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
NUDIX hydrolase
SCNpilot_cont_500_bf_scaffold_3027_4
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2532..2741
DNA (210bp) protein (70aa)
transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CA568
Transporter {ECO:0000313|EMBL:KKC38793.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
molybdenum-pterin-binding protein
SCNpilot_cont_500_bf_scaffold_3027_5
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2837..3193)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N544_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EZQ14263.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein; K09959 hypothetical protein
SCNpilot_cont_500_bf_scaffold_3027_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3264..4781)
DNA (1518bp) protein (506aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XJ44_9RHIZ rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABS13002.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_3027_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4924..5889)
DNA (966bp) protein (322aa)
Transcriptional regulator, Fis family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y060_MESOW rbh
Fis family transcriptional regulator rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:CDX20708.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_cont_500_bf_scaffold_3027_8
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5964..6353)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EIC8_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL77133.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_500_bf_scaffold_3027_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6416..6757)
DNA (342bp) protein (114aa)
Putative molybdenum transport regulator MopA n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FET2_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EZQ16568.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
molybdenum-binding protein
SCNpilot_cont_500_bf_scaffold_3027_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6953..8383
DNA (1431bp) protein (477aa)
Putative Aldehyde dehydrogenase (NAD(+)) {ECO:0000313|EMBL:CDX31834.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDX31834.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI00037310B1
SCNpilot_cont_500_bf_scaffold_3027_11
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8444..9889
DNA (1446bp) protein (482aa)
Vanillin dehydrogenase {ECO:0000313|EMBL:CDX17747.1}; EC=1.2.1.67 {ECO:0000313|EMBL:CDX17747.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
salicylaldehyde dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI0003747E0A
dehydrogenase
SCNpilot_cont_500_bf_scaffold_3027_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9913..11172)
DNA (1260bp) protein (420aa)
Molybdopterin molybdenumtransferase MoeA {ECO:0000313|EMBL:EYR81927.1}; EC=2.10.1.1 {ECO:0000313|EMBL:EYR81927.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Molybdopterin molybdenumtransferase MoeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C317_9RHIZ rbh
moeA; molybdopterin biosynthesis protein
SCNpilot_cont_500_bf_scaffold_3027_13
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11381..11638
DNA (258bp) protein (86aa)
Putative dihydroxyacetone kinase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGR6_MOBAS
Putative dihydroxyacetone kinase {ECO:0000313|EMBL:EAS49159.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
dhaK1; dihydroxyacetone kinase (glycerone kinase), kinase subunit
SCNpilot_cont_500_bf_scaffold_3027_14
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11592..12317
DNA (726bp) protein (242aa)
dahK; PTS-dependent dihydroxyacetone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]
PTS-dependent dihydroxyacetone kinase {ECO:0000313|EMBL:ABV92273.1}; EC=2.7.-.- {ECO:0000313|EMBL:ABV92273.1};; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
PTS-dependent dihydroxyacetone kinase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LNW5_DINSH
SCNpilot_cont_500_bf_scaffold_3027_15
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..12943
DNA (627bp) protein (209aa)
dahL; PTS-dependent dihydroxyacetone kinase; K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
PTS-dependent dihydroxyacetone kinase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C410_9RHIZ
PTS-dependent dihydroxyacetone kinase {ECO:0000313|EMBL:EIM76562.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_cont_500_bf_scaffold_3027_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12959..13564)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAV8_AGRRK
hypothetical protein; K07170 GAF domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:ACM25791.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_3027_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13632..14708)
DNA (1077bp) protein (359aa)
LysR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000382D580 rbh
LysR family transcriptional regulator
Transcriptional regulator of molybdate metabolism, LysR family {ECO:0000313|EMBL:ADJ22047.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_cont_500_bf_scaffold_3027_18
unknown

Not on your lists

comp(14705..14839)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3027_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14857..16311
DNA (1455bp) protein (485aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESR25599.1}; EC=1.2.1.3 {ECO:0000313|EMBL:ESR25599.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C9668 rbh
betaine aldehyde dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_3027_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16428..17393
DNA (966bp) protein (322aa)
formyl transferase domain-containing protein (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000305D5FD rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_3027_21
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17990..18835
DNA (846bp) protein (282aa)
molybdenum transport protein (EC:2.4.2.19) rbh
Molybdenum transport protein {ECO:0000313|EMBL:AGT07253.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AGT07253.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Molybdenum transport protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y7E1_PARAH rbh
Displaying 21 items

View Taxonomy