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SCNpilot_cont_500_bf_scaffold_6450

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6450_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..553
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F1E1B4
ccoP2; cbb3-type cytochrome oxidase subunit CcoP; K00406 cytochrome c oxidase cbb3-type subunit III
Cbb3-type cytochrome oxidase, subunit CcoP {ECO:0000313|EMBL:AEI05684.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_6450_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

550..732
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8A8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81704.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_6450_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

749..1603
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3BAA3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36743.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative transmembrane protein
SCNpilot_cont_500_bf_scaffold_6450_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1600..3831
DNA (2232bp) protein (744aa)
fixI; nitrogen fixation protein FixI (EC:3.6.3.-)
Nitrogen fixation protein FixI {ECO:0000313|EMBL:AEI05681.1}; EC=3.6.3.- {ECO:0000313|EMBL:AEI05681.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Copper-translocating P-type ATPase n=3 Tax=Oligotropha carboxidovorans RepID=B6JIK5_OLICO
SCNpilot_cont_500_bf_scaffold_6450_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3828..3980
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EBD54B
cytochrome oxidase maturation protein, cbb3-type
Cytochrome oxidase maturation protein, cbb3-type {ECO:0000313|EMBL:AGK56711.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_6450_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4013..4462)
DNA (450bp) protein (150aa)
Pseudoazurin n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MPN7_9RHIZ
Pseudoazurin {ECO:0000313|EMBL:EKF19282.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
pseudoazurin
SCNpilot_cont_500_bf_scaffold_6450_7
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(4511..4852)
DNA (342bp) protein (114aa)
Ferredoxin-2 n=2 Tax=Bartonella tamiae RepID=J0R023_9RHIZ
Ferredoxin {ECO:0000313|EMBL:KIF43190.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_cont_500_bf_scaffold_6450_8
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4929..5210)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000369BE8E
Uncharacterized protein {ECO:0000313|EMBL:AKH98808.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
SCNpilot_cont_500_bf_scaffold_6450_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5435..5689
DNA (255bp) protein (85aa)
Hemerythrin HHE cation binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM3_OLICO
hemerythrin HHE cation binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05003.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_6450_10
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5777..7105
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNB8_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KJS10185.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6450_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7122..7655
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3C9_9BRAD
hypothetical protein
SirA-like protein {ECO:0000313|EMBL:CEG07045.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_6450_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7685..8308
DNA (624bp) protein (208aa)
Nifu protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM0_OLICO
nifu protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05006.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_6450_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8317..8553
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRA7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CDX53620.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_500_bf_scaffold_6450_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8591..9112)
DNA (522bp) protein (174aa)
Single-stranded DNA-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NLH7_9RHIZ
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ssDNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_cont_500_bf_scaffold_6450_15
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9303..9539
DNA (237bp) protein (79aa)
UPI0003CFF333 related cluster n=1 Tax=unknown RepID=UPI0003CFF333
ArsR family transcriptional regulator {ECO:0000313|EMBL:KKC36707.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_6450_16
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9536..9976
DNA (441bp) protein (147aa)
UPI0003CFDD7F related cluster n=1 Tax=unknown RepID=UPI0003CFDD7F
ATPase {ECO:0000313|EMBL:ESZ23867.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Activator of Hsp90 ATPase 1 family protein
SCNpilot_cont_500_bf_scaffold_6450_17
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9987..10592
DNA (606bp) protein (202aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
endopeptidase Clp (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F5C1_9RHIZ
SCNpilot_cont_500_bf_scaffold_6450_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11309..12631)
DNA (1323bp) protein (441aa)
saccharopine dehydrogenase (EC:1.5.1.7)
saccharopine dehydrogenase n=1 Tax=Meganema perideroedes RepID=UPI00036B3607 rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:EXL09327.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_cont_500_bf_scaffold_6450_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12671..13714)
DNA (1044bp) protein (348aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
carboxynorspermidine decarboxylase (EC:4.1.1.-)
carboxynorspermidine decarboxylase n=1 Tax=Meganema perideroedes RepID=UPI00038189AB
SCNpilot_cont_500_bf_scaffold_6450_20
unknown

Not on your lists

comp(13854..14069)
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 20 items

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