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SCNpilot_cont_500_bf_scaffold_4325

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4325_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(204..1004)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003680AA0
Universal stress protein UspA and related nucleotide-binding proteins {ECO:0000313|EMBL:CAM74843.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4325_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1001..1387)
DNA (387bp) protein (129aa)
Putative fluoride ion transporter CrcB n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=CRCB_METSB
camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_500_bf_scaffold_4325_3
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1512..3104)
DNA (1593bp) protein (531aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A381_9PROT
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EHL99511.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_4325_4
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3355..3867
DNA (513bp) protein (171aa)
Transcriptional regulator, MarR family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQC2_GRABC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABI62980.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_4325_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3867..5090
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003659B72
Multidrug resistance efflux pump HlyD {ECO:0000313|EMBL:GAN78805.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_cont_500_bf_scaffold_4325_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5122..6645
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318DCB4
Multidrug resistance efflux pump EmrB/QacA {ECO:0000313|EMBL:GAN78804.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_500_bf_scaffold_4325_7
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7049..11113
DNA (4065bp) protein (1355aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y092_MESOW
outer membrane autotransporter barrel domain-containing protein
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:AEH90458.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_4325_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11179..11634)
DNA (456bp) protein (152aa)
Transcriptional regulator, MerR family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TWZ8_TISMK
MerR family transcriptional regulator {ECO:0000313|EMBL:KGM30531.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
zntR; MerR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4325_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11812..14181
DNA (2370bp) protein (790aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Cadmium-exporting ATPase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RGC7_9PROT
ATPase {ECO:0000313|EMBL:KIJ72530.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_cont_500_bf_scaffold_4325_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14248..15075)
DNA (828bp) protein (276aa)
Glycosyl transferase family 2 n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KYP6_METC4
Glycosyl transferase family 2 {ECO:0000313|EMBL:GAN77266.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
family 2 glycosyl transferase
SCNpilot_cont_500_bf_scaffold_4325_11
unknown

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15587..17125
DNA (1539bp) protein (513aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4325_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17927..18703
DNA (777bp) protein (259aa)
Methyltransferase type 11 id=4996868 bin=GWA2_Methylomirabilis_73_35 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Methyltransferase type 11
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_cont_500_bf_scaffold_4325_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18829..20061
DNA (1233bp) protein (411aa)
formyl-coenzyme A transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16]
hypothetical protein n=1 Tax=Arthrobacter sp. 161MFSha2.1 RepID=UPI0003712462
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_500_bf_scaffold_4325_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20118..20480)
DNA (363bp) protein (121aa)
Periplasmic nitrate reductase, cytochrome c-type subunit n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD41_AZOL4
napC2; Periplasmic nitrate reductase, cytochrome c-type subunit; K02569 cytochrome c-type protein NapC
Cytochrome c-type protein {ECO:0000256|PIRNR:PIRNR000013}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Displaying 14 items

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