ggKbase home page

SCNpilot_cont_500_bf_scaffold_4432

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4432_1
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1113
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ICD2_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP41553.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_4432_2
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1216..1767
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HGU3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERS09318.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
TRAP dicarboxylate transporter subunit DctQ
SCNpilot_cont_500_bf_scaffold_4432_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1775..3088
DNA (1314bp) protein (438aa)
Putative membrane protein (TrapT family, dctM subunit transport) n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ICC9_BORPD rbh
TrapT family protein rbh
Putative membrane protein (TrapT family, dctM subunit transport) {ECO:0000313|EMBL:CAP41552.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_4432_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3122..4012)
DNA (891bp) protein (297aa)
Uncharacterized protein DUF6, transmembrane n=1 Tax=Rhodovulum sp. PH10 RepID=J9DWX8_9RHOB
Uncharacterized protein DUF6, transmembrane {ECO:0000313|EMBL:EJW09599.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative permease, DMT superfamily
SCNpilot_cont_500_bf_scaffold_4432_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4032..4235)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000349DDB4
chaB; Cation transport regulator ChaB; K06197 cation transport regulator
Cation transport regulator ChaB {ECO:0000313|EMBL:CCB64604.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_500_bf_scaffold_4432_6
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4314..5426)
DNA (1113bp) protein (371aa)
Beta-lactamase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5Y6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETR76432.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
beta-lactamase
SCNpilot_cont_500_bf_scaffold_4432_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5541..5792
DNA (252bp) protein (84aa)
Transcriptional regulator, AbrB family n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QMI6_METTR
Transcriptional regulator AbrB {ECO:0000313|EMBL:CCV07453.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4432_8

Not on your lists

5789..6187
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QFF1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05941.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4432_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6253..6711
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4XZV2_9PROT
Phosphoserine aminotransferase {ECO:0000313|EMBL:GAN77007.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4432_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6715..7392
DNA (678bp) protein (226aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KDC1_9PROT
SCNpilot_cont_500_bf_scaffold_4432_11
unknown

Not on your lists

7392..7559
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4432_12
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7615..8760)
DNA (1146bp) protein (382aa)
C4-dicarboxylate transporter/malic acid transport family protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q3J6_METSZ rbh
C4-dicarboxylate transporter/malic acid transport family protein rbh
C4-dicarboxylate transporter/malic acid transport family protein {ECO:0000313|EMBL:CCJ05889.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_500_bf_scaffold_4432_13
unknown

Not on your lists

9512..9760
DNA (249bp) protein (83aa)
Transcriptional regulator, LysR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IIC5_BEII9
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CPR22311.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4432_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9799..11502
DNA (1704bp) protein (568aa)
Acetyl-CoA synthetase n=1 Tax=Azoarcus sp. KH32C RepID=H0PXJ6_9RHOO
Fatty-acid--CoA ligase/acetyl-coenzyme A synthetase {ECO:0000313|EMBL:GAN78300.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
acsB; acetyl-CoA synthetase
SCNpilot_cont_500_bf_scaffold_4432_15
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11663..12571
DNA (909bp) protein (303aa)
Putative ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T1R0_9BRAD
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCE00387.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
ABC transporter permease
SCNpilot_cont_500_bf_scaffold_4432_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12568..13428
DNA (861bp) protein (287aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CU88_VARPS
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS20301.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_4432_17
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13466..14854
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000363C6B4
carbohydrate ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIE12394.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
SCNpilot_cont_500_bf_scaffold_4432_18
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14924..15781
DNA (858bp) protein (286aa)
Amino acid ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G9V0_9BRAD rbh
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KJC52541.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4432_19
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15807..16775
DNA (969bp) protein (323aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C7F1B
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGT76448.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4432_20
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16756..17487
DNA (732bp) protein (244aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YP90_9BRAD
ABC transporter {ECO:0000313|EMBL:KJC59029.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_4432_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17632..17793)
DNA (162bp) protein (54aa)
Oxidoreductase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1CRY1_9ZZZZ
Aldo/keto reductase {ECO:0000313|EMBL:KJC47767.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
aldo/keto reductase
Displaying 21 items

View Taxonomy