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SCNpilot_cont_500_bf_scaffold_5180

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5180_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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272..1510
DNA (1239bp) protein (413aa)
nucleoside:proton symporter n=1 Tax=Methyloferula stellata RepID=UPI00037D3FC0
Nucleoside permease {ECO:0000313|EMBL:GAN76742.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Na+ dependent nucleoside transporter domain-containing protein; K03317 concentrative nucleoside transporter, CNT family
SCNpilot_cont_500_bf_scaffold_5180_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1584..2438
DNA (855bp) protein (285aa)
Putative carboxy-phosphonoenolpyruvate mutase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK14_9PROT
carboxyphosphoenolpyruvate phosphonomutase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_5180_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2496..2957)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FED0C0
Transcriptional regulator polyhydroxyalkanoate biosynthesis {ECO:0000313|EMBL:GAN77881.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phasin family protein
SCNpilot_cont_500_bf_scaffold_5180_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3058..4269)
DNA (1212bp) protein (404aa)
metC; cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E854B
Cystathionine beta-lyase {ECO:0000313|EMBL:GAN76645.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_5180_5
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4270..5109)
DNA (840bp) protein (280aa)
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] rbh
hypothetical protein n=1 Tax=Pseudomonas luteola RepID=UPI0002E0D3B0 rbh
Uncharacterized protein {ECO:0000313|EMBL:ENA35891.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
SCNpilot_cont_500_bf_scaffold_5180_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5316..6101)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHG0_9PROT rbh
ABC transporter {ECO:0000313|EMBL:GAN76556.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter permease; K02066 putative ABC transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_5180_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6098..7189)
DNA (1092bp) protein (364aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPY6_GRABC
SCNpilot_cont_500_bf_scaffold_5180_8
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8328..9533
DNA (1206bp) protein (402aa)
Heme oxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFA2_PHEZH
heme oxygenase
Heme oxygenase {ECO:0000313|EMBL:ACG78672.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_500_bf_scaffold_5180_9
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9530..11854
DNA (2325bp) protein (775aa)
Bacteriophytochrome protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y089_9PROT rbh
Bacteriophytochrome protein {ECO:0000313|EMBL:EGY01080.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
bacteriophytochrome protein rbh
SCNpilot_cont_500_bf_scaffold_5180_10
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11812..12282
DNA (471bp) protein (157aa)
Response regulator n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZJ22_9PROT
Response regulator {ECO:0000313|EMBL:EKM99455.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
response regulator
SCNpilot_cont_500_bf_scaffold_5180_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12286..14694
DNA (2409bp) protein (803aa)
Sensor histidine kinase/response regulator n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF99_PHEZH rbh
sensor histidine kinase/response regulator rbh
Sensor histidine kinase/response regulator {ECO:0000313|EMBL:ACG78669.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_500_bf_scaffold_5180_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..15346)
DNA (537bp) protein (179aa)
Transcription elongation factor GreB n=1 Tax=Azospirillum amazonense Y2 RepID=G1XZ54_9PROT
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930, ECO:0000313|EMBL:KJB95736.1}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
greB; transcription elongation factor GreB; K04760 transcription elongation factor GreB
SCNpilot_cont_500_bf_scaffold_5180_13
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15438..16148
DNA (711bp) protein (237aa)
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVM2_9GAMM
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:EGW21759.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
haloacid dehalogenase domain-containing protein hydrolase
SCNpilot_cont_500_bf_scaffold_5180_14
unknown

Not on your lists

16153..16332
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5180_15
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16449..16868)
DNA (420bp) protein (140aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
Ribonuclease VapC n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXN7_RHOCS
hypothetical protein; K07062
SCNpilot_cont_500_bf_scaffold_5180_16
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16865..17113)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KNS2_RHISN
VapB protein (Antitoxin to VapC) {ECO:0000313|EMBL:KEC76525.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5180_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17461..18609
DNA (1149bp) protein (383aa)
4-hydroxyphenylacetate 3-hydroxylase; K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9]
4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU20_PARL1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_5180_18
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18646..20871
DNA (2226bp) protein (742aa)
penicilin amidase; K01434 penicillin amidase [EC:3.5.1.11] rbh
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HT53_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKV31481.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
SCNpilot_cont_500_bf_scaffold_5180_19
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20873..22408
DNA (1536bp) protein (512aa)
GH3 auxin-responsive promoter n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TE75_9DELT rbh
GH3 auxin-responsive promoter {ECO:0000313|EMBL:EPR34880.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
auxin-responsive GH3-related protein rbh
SCNpilot_cont_500_bf_scaffold_5180_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23109..23294
DNA (186bp) protein (62aa)
AAA ATPase (EC:3.6.4.3); K13525 transitional endoplasmic reticulum ATPase
ATPase AAA n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F88890
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:EIM29519.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Displaying 20 items

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