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SCNpilot_cont_500_bf_scaffold_7220

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7220_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..535)
DNA (534bp) protein (178aa)
Methyltransferase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4H5_9RHIZ
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AGK57117.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(532..2700)
DNA (2169bp) protein (723aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9B7_9RHIZ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGK57116.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2768..3055)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAG8_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57115.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3078..3443)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETS7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV08364.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7220_5
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3568..4170)
DNA (603bp) protein (201aa)
Thiol:disulfide interchange protein cycY n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F905_9RHIZ
cycY; cytochrome c-type biogenesis protein CycY (periplasmic thioredoxin)
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_cont_500_bf_scaffold_7220_6
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4175..4687)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W8V8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ22986.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7220_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4701..5120)
DNA (420bp) protein (140aa)
Cytochrome c class I n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4G9_9RHIZ
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AGK57112.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5122..5670)
DNA (549bp) protein (183aa)
Cytochrome c class I n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4G9_9RHIZ
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AGK57112.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5767..7197)
DNA (1431bp) protein (477aa)
Multicopper oxidase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9B2_9RHIZ rbh
multicopper oxidase rbh
Multicopper oxidase {ECO:0000313|EMBL:AGK57111.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7327..7605)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAG5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57110.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_7220_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7720..8268)
DNA (549bp) protein (183aa)
Bll3088 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89QN6_BRADU
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_7220_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8504..8740
DNA (237bp) protein (79aa)
Cation translocating P-type ATPase n=2 Tax=Oligotropha carboxidovorans RepID=B6JKB2_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig140, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53550.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cation translocating P-type ATPase
SCNpilot_cont_500_bf_scaffold_7220_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8783..11149
DNA (2367bp) protein (789aa)
copA; copper-transporting ATPase CopA (EC:3.6.3.4)
Copper/silver-translocating P-type ATPase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QSX1_9BRAD
Putative copper-importing P-type ATPase A {ECO:0000313|EMBL:CEG10190.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_7220_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11157..12401
DNA (1245bp) protein (415aa)
Major facilitator superfamily MFS_1 n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JKB4_OLICO
L-galactonate transporter {ECO:0000313|EMBL:CEG10189.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
MFS transporter
SCNpilot_cont_500_bf_scaffold_7220_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12502..12927
DNA (426bp) protein (142aa)
Transcriptional regulator, MerR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFJ2_NITHX
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE65005.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_7220_16
unknown

Not on your lists

comp(12915..13028)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_7220_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13276..13794
DNA (519bp) protein (173aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFJ4_NITHX
cytochrome c biogenesis protein, transmembrane region
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:ABE65003.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_7220_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13802..14185
DNA (384bp) protein (128aa)
Mercuric transport protein MerT n=1 Tax=Octadecabacter antarcticus 307 RepID=M9RAR5_9RHOB
Putative mercuric transport protein {ECO:0000313|EMBL:CEG10185.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
merT1; mercuric transport protein MerT
SCNpilot_cont_500_bf_scaffold_7220_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14197..14478
DNA (282bp) protein (94aa)
Mercuric transport protein periplasmic component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QSW5_9BRAD
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
merP; mercuric transport protein periplasmic componentMerP
SCNpilot_cont_500_bf_scaffold_7220_20
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15129..16949)
DNA (1821bp) protein (607aa)
putative ATP-dependent DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
DNA helicase UvrD n=3 Tax=Sphingobium RepID=T0GXF9_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_7220_21
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16936..17844)
DNA (909bp) protein (303aa)
Nuclease, OLD family n=2 Tax=Rhodobacter capsulatus RepID=D5AVL2_RHOCB
OLD family nuclease; K07459 putative ATP-dependent endonuclease of the OLD family
Nuclease, OLD family {ECO:0000313|EMBL:ADE87347.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
Displaying 21 items

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