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SCNpilot_cont_500_bf_scaffold_2224

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2224_1
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22..942
DNA (921bp) protein (307aa)
NAD binding domain of 6-phosphogluconate dehydrogenase family protein 9 (EC:1.1.1.-)
NAD binding domain of 6-phosphogluconate dehydrogenase family protein 9 {ECO:0000313|EMBL:ADP19292.1}; EC=1.1.1.- {ECO:0000313|EMBL:ADP19292.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
NAD binding domain of 6-phosphogluconate dehydrogenase family protein 9 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKK4_ACHXA
SCNpilot_cont_500_bf_scaffold_2224_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1142..1630)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ACH4_COLFT
Uncharacterized protein {ECO:0000313|EMBL:GAN78105.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1627..2163)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXJ3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN78104.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_4
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2253..3134)
DNA (882bp) protein (294aa)
Alpha/beta hydrolase fold protein id=3866289 bin=GWF2_Syntrophobacterales_56_9 species=Methylobacterium sp. GXF4 genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
alpha/beta hydrolase fold protein rbh
Tax=RBG_16_Deltaproteobacteria_58_17_curated
SCNpilot_cont_500_bf_scaffold_2224_5
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3272..4996
DNA (1725bp) protein (575aa)
Sodium/hydrogen exchanger n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZEW0_GLUDA rbh
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ACI50604.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_500_bf_scaffold_2224_6
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5022..5888
DNA (867bp) protein (289aa)
Citryl-CoA lyase (EC:4.1.3.6); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] rbh
Citryl-CoA lyase {ECO:0000313|EMBL:ABE36191.1}; EC=4.1.3.6 {ECO:0000313|EMBL:ABE36191.1};; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
Citryl-CoA lyase n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13I98_BURXL rbh
SCNpilot_cont_500_bf_scaffold_2224_7
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6156..7322)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F8109
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:KCB42369.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_2224_8
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7461..10385
DNA (2925bp) protein (975aa)
Putative adenylate cyclase/transcriptional regulator n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y4N5_9PROT rbh
Putative adenylate cyclase/transcriptional regulator {ECO:0000313|EMBL:EGX99521.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..11206)
DNA (732bp) protein (244aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBC5_VARPE
short-chain dehydrogenase/reductase sdr; K07124
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU38655.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_2224_10
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11438..11890
DNA (453bp) protein (151aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVV5_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EYF03241.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11938..13362)
DNA (1425bp) protein (475aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22 5.3.1.8); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] rbh
Mannose-6-phosphate isomerase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV98_GRABC rbh
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:GAN77649.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_2224_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13501..14691
DNA (1191bp) protein (397aa)
hyppurate hydrolase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DB2686 rbh
Amidohydrolase/peptidase M20 {ECO:0000313|EMBL:GAN77650.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hipO; hyppurate hydrolase
SCNpilot_cont_500_bf_scaffold_2224_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14720..15946)
DNA (1227bp) protein (409aa)
MFS transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F5C87C
Bradyrhizobium elkanii strain UASWS1015 Contig186, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43965.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_trna_1
unknown

Not on your lists

comp(16030..16102)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2224_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16267..16581
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EC541B
YGGT family protein {ECO:0000313|EMBL:EHM02470.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_cont_500_bf_scaffold_2224_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16578..16880
DNA (303bp) protein (101aa)
UPF0235 protein HMPREF0731_1908 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLE7_9PROT
UPF0235 protein HMPREF0731_1908 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein; K09131 hypothetical protein
SCNpilot_cont_500_bf_scaffold_2224_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16877..17734
DNA (858bp) protein (286aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=FOLD_ACICJ rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_500_bf_scaffold_2224_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17787..18206)
DNA (420bp) protein (140aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D4E6B9
Acetylglutamate kinase {ECO:0000313|EMBL:GAN78381.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_2224_18
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..18611)
DNA (363bp) protein (121aa)
cytochrome O ubiquinol oxidase n=1 Tax=Serratia marcescens RepID=UPI0002EA25B0
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:KGY52906.1}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
DedA family protein
SCNpilot_cont_500_bf_scaffold_2224_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18844..19635)
DNA (792bp) protein (264aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFH13274.1}; EC=1.3.1.- {ECO:0000313|EMBL:EFH13274.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036D4927 rbh
short-chain dehydrogenase
SCNpilot_cont_500_bf_scaffold_2224_20
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19683..20576
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7S337_9PROT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EGO96478.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_500_bf_scaffold_2224_21
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20573..21202
DNA (630bp) protein (210aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=940265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471.;"
guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 RepID=H1UNS4_ACEPA
SCNpilot_cont_500_bf_scaffold_2224_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22169..22735)
DNA (567bp) protein (189aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DAE85D
Displaying 23 items

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