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SCNpilot_cont_500_bf_scaffold_2427

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2427_1
unknown

Not on your lists

1..273
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2427_2
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(221..877)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037D3D32
Uncharacterized protein {ECO:0000313|EMBL:EGO95289.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_500_bf_scaffold_2427_3
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1117..1749)
DNA (633bp) protein (211aa)
Putative aldolase {ECO:0000313|EMBL:EFH12408.1}; EC=4.1.2.17 {ECO:0000313|EMBL:EFH12408.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035DF56E rbh
putative aldolase
SCNpilot_cont_500_bf_scaffold_2427_4
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1751..3016)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000360672E
YgbK domain protein {ECO:0000313|EMBL:EHM02096.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Hrp-dependent type III effector protein
SCNpilot_cont_500_bf_scaffold_2427_5
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3182..4231)
DNA (1050bp) protein (350aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EFH09957.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFH09957.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRW7_9PROT
putative glycosyltransferase
SCNpilot_cont_500_bf_scaffold_2427_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4300..5022)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DK65_BRAJP
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76532.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2427_7
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6427..7929
DNA (1503bp) protein (501aa)
Serine protein kinase (PrkA protein), P-loop containing n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GYH0_9PROT
Serine protein kinase (PrkA protein), P-loop containing {ECO:0000313|EMBL:EKV29814.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
putative serine protein kinase PrkA; K07180 serine protein kinase
SCNpilot_cont_500_bf_scaffold_2427_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7929..8282
DNA (354bp) protein (118aa)
Putative Ser protein kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLY4_9RHIZ
Serine protein kinase PrkA {ECO:0000313|EMBL:GAN77922.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
serine protein kinase; K07180 serine protein kinase
SCNpilot_cont_500_bf_scaffold_2427_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8374..9687
DNA (1314bp) protein (438aa)
UPF0229 protein RC1_3553 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IX82_RHOCS rbh
UPF0229 protein Asru_0521_03 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K09786 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2427_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9684..11249
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLY2_9RHIZ rbh
Stage V sporulation protein R/SpoVR {ECO:0000313|EMBL:GAN77924.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SpoVR family protein rbh
SCNpilot_cont_500_bf_scaffold_2427_11
unknown

Not on your lists

comp(11365..11664)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2427_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11931..12944)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Synechococcus sp. CB0205 RepID=UPI0002002920
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
SCNpilot_cont_500_bf_scaffold_2427_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12959..13606)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CAA05
Uncharacterized protein {ECO:0000313|EMBL:GAN76906.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2427_14
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13684..15240
DNA (1557bp) protein (519aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W413_MAGSA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE51412.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_500_bf_scaffold_2427_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15279..17702
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000376FCC1 rbh
Methyl-accepting chemotaxis protein signaling domain protein {ECO:0000313|EMBL:EFH10905.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_cont_500_bf_scaffold_2427_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17896..19032)
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000371F8A3
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACA14804.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_2427_17
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19032..20237)
DNA (1206bp) protein (402aa)
pimeloyl-CoA dehydrogenase, large subunit; K00257 [EC:1.3.99.-]
Pimeloyl-CoA dehydrogenase, large subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFF1_METS4
Pimeloyl-CoA dehydrogenase, large subunit {ECO:0000313|EMBL:ACA14805.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_2427_18
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20339..22306)
DNA (1968bp) protein (656aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000373E807
Uncharacterized protein {ECO:0000313|EMBL:KHJ55823.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2427_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22394..22639)
DNA (246bp) protein (82aa)
FmdB family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI000371CABC
Transcriptional regulator FmdB {ECO:0000313|EMBL:GAN76425.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
FmdB family regulatory protein
SCNpilot_cont_500_bf_scaffold_2427_20
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22774..23712
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XHV3_ALCXX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH04124.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_cont_500_bf_scaffold_2427_21
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23779..24666
DNA (888bp) protein (296aa)
2-hydroxy-3-oxopropionate reductase n=2 Tax=Clostridiales RepID=G9YRG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETR78952.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
2-hydroxy-3-oxopropionate reductase
SCNpilot_cont_500_bf_scaffold_2427_22
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24847..25278
DNA (432bp) protein (144aa)
Putative two component transcriptional regulator, winged helix family n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H094_GLUDA
response regulator receiver protein
Putative two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:CAP57094.1}; Response regulator receiver protein {ECO:0000313|EMBL:ACI52937.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_500_bf_scaffold_2427_23
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25542..25811)
DNA (270bp) protein (90aa)
Sugar fermentation stimulation protein B n=1 Tax=Dickeya sp. D s0432-1 RepID=U6ZKC5_9ENTR
nlp; regulator for maltose metabolism; K07724 Ner family transcriptional regulator
Putative regulator for maltose metabolism {ECO:0000313|EMBL:ADM96825.1}; TaxID=198628 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)).;"
SCNpilot_cont_500_bf_scaffold_2427_24
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25948..26676
DNA (729bp) protein (243aa)
Putative phage repressor n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0LD08_MAGSM
phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABK45851.1}; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1).;"
SCNpilot_cont_500_bf_scaffold_2427_25
Pseudomonas sp. 5, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26805..28304)
DNA (1500bp) protein (500aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1619949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 5.;"
glgA; glycogen synthase (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21] rbh
glycogen synthase n=1 Tax=Pseudomonas sp. HYS RepID=UPI00029A4500 rbh
SCNpilot_cont_500_bf_scaffold_2427_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28808..29053)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003786842
Uncharacterized protein {ECO:0000313|EMBL:EHM00583.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2427_27
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29070..29282)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0IX60_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ80470.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_500_bf_scaffold_2427_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29462..30505
DNA (1044bp) protein (348aa)
Rod shape-determining protein mreB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS34_GRABC
Rod shape-determining protein MreB {ECO:0000313|EMBL:GAN77180.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins
SCNpilot_cont_500_bf_scaffold_2427_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30568..31428
DNA (861bp) protein (287aa)
Cell shape-determining protein MreC n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A144_9PROT rbh
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
SCNpilot_cont_500_bf_scaffold_2427_30
unknown

Not on your lists

31428..31598
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 30 items

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