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SCNpilot_cont_500_bf_scaffold_2488

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2488_1
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..379
DNA (378bp) protein (126aa)
Extracellular solute-binding protein family 5 n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M2H8_METRJ
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:GAN52571.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
SCNpilot_cont_500_bf_scaffold_2488_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(491..2593)
DNA (2103bp) protein (701aa)
fadJ1; fatty acid oxidation complex subunit alpha (EC:1.1.1.35 4.2.1.17 5.1.2.3) rbh
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037FB799 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_cont_500_bf_scaffold_2488_3
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2720..3760)
DNA (1041bp) protein (347aa)
5,10-methylenetetrahydromethanopterin reductase n=1 Tax=gamma proteobacterium BDW918 RepID=I2JHU4_9GAMM rbh
5,10-methylenetetrahydromethanopterin reductase {ECO:0000313|EMBL:EIF42546.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
putative F420-dependent oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_2488_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3769..4722)
DNA (954bp) protein (318aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured Chloroflexi bacterium HF0200_06I16 RepID=E0XTZ6_9CHLR
luciferase family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_5

Not on your lists

4802..5755
DNA (954bp) protein (318aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured Chloroflexi bacterium HF0200_06I16 RepID=E0XTZ6_9CHLR
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases {ECO:0000313|EMBL:ADI17887.1}; TaxID=710735 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0200_06I16.;"
luciferase-like protein
SCNpilot_cont_500_bf_scaffold_2488_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5752..8106
DNA (2355bp) protein (785aa)
radical SAM protein; K11779 FO synthase [EC:2.5.1.-]
Radical SAM domain protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIE0_THET1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8202..9185
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000366DDEE
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_2488_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9307..9969)
DNA (663bp) protein (221aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
2-phospho-L-lactate guanylyltransferase id=2615049 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9966..10904)
DNA (939bp) protein (313aa)
LPPG:FO 2-phospho-L-lactate transferase (EC:2.7.8.28)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035E7D71 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11668)
DNA (768bp) protein (256aa)
bifunctional F420-0:gamma-glutamyl ligase (EC:6.3.2.34 6.3.2.31)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000381F660 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_11
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12383..13174)
DNA (792bp) protein (264aa)
short-chain dehydrogenase (EC:1.-.-.-); K00540 [EC:1.-.-.-] rbh
oxidoreductase n=1 Tax=Burkholderia kururiensis RepID=UPI000347AE48 rbh
Putative oxidoreductase {ECO:0000313|EMBL:CDY79825.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
SCNpilot_cont_500_bf_scaffold_2488_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13336..14373)
DNA (1038bp) protein (346aa)
glucose-6-phosphate dehydrogenase; K15510 coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036A651E
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2488_13
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14550..15659
DNA (1110bp) protein (370aa)
Glycosyl transferase family 2 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZEU5_GLUDA rbh
family 2 glycosyl transferase rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACI50589.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_500_bf_scaffold_2488_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15660..16739
DNA (1080bp) protein (360aa)
acyl-CoA dehydrogenase n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237EE32
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAN77086.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cyclic nucleotide-binding protein
SCNpilot_cont_500_bf_scaffold_2488_15
Komagataeibacter europaeus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16736..17470
DNA (735bp) protein (245aa)
GPI biosynthesis protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002E16CBF
Uncharacterized protein {ECO:0000313|EMBL:GAN95608.1}; TaxID=1234669 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter europaeus NBRC 3261.;"
GPI biosynthesis protein
SCNpilot_cont_500_bf_scaffold_2488_16
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..18296
DNA (570bp) protein (190aa)
type 12 methyltransferase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034671CE
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ACB82410.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_500_bf_scaffold_2488_17
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18388..19029)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=1 Tax=Pseudomonas viridiflava UASWS0038 RepID=K6C9G1_PSEVI
Strain LMCA8 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31671.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;"
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2488_18
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19084..19872)
DNA (789bp) protein (263aa)
Hydrolase/acyltransferase family protein; K09023 aminoacrylate hydrolase [EC:3.5.1.-]
Putative aminoacrylate hydrolase RutD {ECO:0000256|HAMAP-Rule:MF_00832, ECO:0000256|SAAS:SAAS00023219}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00832, ECO:0000256|SAAS:SAAS00023215};; Aminohydrolase {ECO:0000256|HAMAP-Rule:MF_00832}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
Putative aminoacrylate hydrolase RutD n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y423_KETVW
SCNpilot_cont_500_bf_scaffold_2488_19
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19898..20290)
DNA (393bp) protein (131aa)
Putative aminoacrylate peracid reductase RutC {ECO:0000256|HAMAP-Rule:MF_00831, ECO:0000256|SAAS:SAAS00023348}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_00831, ECO:0000256|SAAS:SAAS00023353};; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
aminoacrylate peracid reductase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D982C4
endoribonuclease L-PSP family protein; K09021 aminoacrylate peracid reductase
SCNpilot_cont_500_bf_scaffold_2488_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20301..21014)
DNA (714bp) protein (238aa)
isochorismatase; K09020 ureidoacrylate peracid hydrolase [EC:3.5.1.110]
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB {ECO:0000256|HAMAP-Rule:MF_00830, ECO:0000256|SAAS:SAAS00023142}; EC=3.5.1.110 {ECO:0000256|HAMAP-Rule:MF_00830, ECO:0000256|SAAS:SAAS00023120};; Ureidoacrylate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_00830}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacter
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A2X7_RHIRD
SCNpilot_cont_500_bf_scaffold_2488_21
Cronobacter malonaticus, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21011..21877)
DNA (867bp) protein (289aa)
Pyrimidine monooxygenase RutA {ECO:0000256|HAMAP-Rule:MF_01699, ECO:0000256|SAAS:SAAS00023214}; EC=1.14.99.46 {ECO:0000256|HAMAP-Rule:MF_01699, ECO:0000256|SAAS:SAAS00023208};; TaxID=1208662 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter malonaticus 507.;"
Pyrimidine monooxygenase RutA n=4 Tax=Cronobacter RepID=RUTA_CROS8
monooxygenase RutA
Displaying 21 items

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