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SCNpilot_cont_500_bf_scaffold_2985

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2985_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15..728)
DNA (714bp) protein (238aa)
ABC transporter related n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U9H5_METS4
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACA16400.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_2985_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(972..1706)
DNA (735bp) protein (245aa)
ABC transporter related n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U9H4_METS4 rbh
Strain MEJ076 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98166.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_2985_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1699..2655)
DNA (957bp) protein (319aa)
Putative branched-chain amino acid ABC transporter (Permease protein) livM-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K4_POLGS
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_2985_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2948..3820)
DNA (873bp) protein (291aa)
Candidate ABC type branched chain amino acid transport systems, permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWI9_RAMTT
branched chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_500_bf_scaffold_2985_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3855..4997)
DNA (1143bp) protein (381aa)
ABC transporter, substrate-binding protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MGZ9_9BURK
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_2985_6
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5155..6078)
DNA (924bp) protein (308aa)
inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.1); K01239 purine nucleosidase [EC:3.2.2.1] rbh
Putative cytidine/uridine-specific hydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXA2_9PROT
Putative cytidine/uridine-specific hydrolase {ECO:0000313|EMBL:EHM02351.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_500_bf_scaffold_2985_7
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6329..7114
DNA (786bp) protein (262aa)
dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XQY4_9PROT rbh
Oxidoreductase/SDR, 3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:GAN80350.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
SCNpilot_cont_500_bf_scaffold_2985_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7225..7815
DNA (591bp) protein (197aa)
phosphoheptose isomerase; K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
Phosphoheptose isomerase n=3 Tax=Acidiphilium RepID=A5G116_ACICJ
Phosphoheptose isomerase {ECO:0000313|EMBL:GAN76056.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_2985_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7826..8791
DNA (966bp) protein (322aa)
polysaccharide biosynthesis protein; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
Polysaccharide biosynthesis protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J380_ACIMA rbh
UDP-N-acetylglucosamine 4-epimerase {ECO:0000313|EMBL:GAN76057.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_2985_10
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8925..9890
DNA (966bp) protein (322aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K01802 peptidylprolyl isomerase [EC:5.2.1.8] rbh
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BUI1_GRABC rbh
SCNpilot_cont_500_bf_scaffold_2985_11
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9922..11166
DNA (1245bp) protein (415aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.1 2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RI29_9PROT
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
SCNpilot_cont_500_bf_scaffold_2985_12
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11357..12199)
DNA (843bp) protein (281aa)
Formate/nitrite transporter n=1 Tax=Burkholderia sp. SJ98 RepID=K8QZP3_9BURK
Formate/nitrite transporter {ECO:0000313|EMBL:EKS66739.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
putative transport protein
SCNpilot_cont_500_bf_scaffold_2985_13
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12196..12861)
DNA (666bp) protein (222aa)
HAD family hydrolase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003828C54
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ACB22658.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_500_bf_scaffold_2985_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13024..13818
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Bacillus coagulans 36D1 RepID=G2THI7_BACCO
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2985_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13832..14746
DNA (915bp) protein (305aa)
smp-30/gluconolaconase/lre-like region-containing protein; K01053 gluconolactonase [EC:3.1.1.17] rbh
SMP-30/Gluconolaconase/LRE-like region-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2H0_VARPE rbh
Glconolactonase {ECO:0000313|EMBL:ETX02927.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCNpilot_cont_500_bf_scaffold_2985_16
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14819..15049
DNA (231bp) protein (77aa)
CsbD-like protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A750_9PROT
CsbD-like protein {ECO:0000313|EMBL:EHL96703.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
CsbD family protein
SCNpilot_cont_500_bf_scaffold_2985_17
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15114..16544
DNA (1431bp) protein (477aa)
glycogen debranching protein GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Glycogen debranching enzyme GlgX n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IS28_METNO
Displaying 17 items

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