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SCNpilot_cont_500_bf_scaffold_572

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_572_1
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..889)
DNA (888bp) protein (296aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZQ4_RHOFD
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABD68749.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_cont_500_bf_scaffold_572_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1066..1593)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI000303F0C8
Uncharacterized protein {ECO:0000313|EMBL:ETX06320.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_572_3
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1707..2243)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037860AB
Acetyltransferase {ECO:0000313|EMBL:ETW13427.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
putative N-acetyltransferase
SCNpilot_cont_500_bf_scaffold_572_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2870..3922
DNA (1053bp) protein (351aa)
OmpA family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS57_9PROT rbh
Outer membrane protein OmpA {ECO:0000313|EMBL:GAN77306.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
outer membrane protein OmpA
SCNpilot_cont_500_bf_scaffold_572_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4256..5338
DNA (1083bp) protein (361aa)
OmpA/MotB domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FUX0_ACICJ rbh
Outer membrane protein OmpA {ECO:0000313|EMBL:GAN77400.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
OmpA/MotB domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_572_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5468..6553
DNA (1086bp) protein (362aa)
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFH09111.1}; EC=2.1.1.63 {ECO:0000313|EMBL:EFH09111.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000382ED7A rbh
SCNpilot_cont_500_bf_scaffold_572_7
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7433..9037
DNA (1605bp) protein (535aa)
TonB-dependent siderophore receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVE4_9PROT
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EGY02762.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_500_bf_scaffold_572_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9051..9725
DNA (675bp) protein (225aa)
putative hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
Putative hydroxylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAH1_GEMAT rbh
Putative hydroxylase {ECO:0000313|EMBL:BAH39769.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
SCNpilot_cont_500_bf_scaffold_572_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9727..10893
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZH77_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS90786.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_500_bf_scaffold_572_10
bacterium YEK0313, Bacteria

Not on your lists

10914..11684
DNA (771bp) protein (257aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZJ7_RHOP2
Biopolymer transport protein ExbB {ECO:0000313|EMBL:CEJ14838.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
SCNpilot_cont_500_bf_scaffold_572_11
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11689..12225
DNA (537bp) protein (179aa)
Outer membrane transport energization protein ExbD n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZZ4_PARDP
Biopolymer transporter ExbD {ECO:0000313|EMBL:KGJ05862.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
SCNpilot_cont_500_bf_scaffold_572_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12222..13040
DNA (819bp) protein (273aa)
TonB protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5U1_AZOS1
tonB protein; K03832 periplasmic protein TonB
TonB protein {ECO:0000313|EMBL:BAI76020.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_500_bf_scaffold_572_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13163..13978
DNA (816bp) protein (272aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BMD0_OLICM
hypothetical protein; K06966
Uncharacterized protein {ECO:0000313|EMBL:AEI07457.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_572_14
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14546..16318
DNA (1773bp) protein (591aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
DNA polymerase III alpha subunit n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSM4_GRABC
SCNpilot_cont_500_bf_scaffold_572_15
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16270..17862
DNA (1593bp) protein (531aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
DNA polymerase III, alpha subunit n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZLD1_GLUDA
SCNpilot_cont_500_bf_scaffold_572_16
unknown

Not on your lists

comp(17879..18070)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_572_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18463..19251)
DNA (789bp) protein (263aa)
Citrate utilization protein B id=3085410 bin=GWC2_Methylomirabilis_70_16 species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K13795 citrate/tricarballylate utilization protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_cont_500_bf_scaffold_572_18
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19486..20886)
DNA (1401bp) protein (467aa)
Tricarballylate dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YKR0_9PROT
Tricarballylate dehydrogenase {ECO:0000313|EMBL:EKM99461.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein; K13796 tricarballylate dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_572_19
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21082..21636
DNA (555bp) protein (185aa)
sulfopyruvate decarboxylase (subunit alpha) (EC:4.1.1.79)
Putative Sulfopyruvate decarboxylase (Alpha subunit) {ECO:0000313|EMBL:CAL78635.1}; EC=4.1.1.79 {ECO:0000313|EMBL:CAL78635.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative Sulfopyruvate decarboxylase (Alpha subunit) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YXK9_BRASO
SCNpilot_cont_500_bf_scaffold_572_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21647..22279
DNA (633bp) protein (211aa)
Thiamine pyrophosphate enzyme-like TPP-binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JF9_MESSB
hypothetical protein
Thiamine pyrophosphate enzyme-like TPP-binding protein {ECO:0000313|EMBL:ABG62466.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_572_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22283..23545
DNA (1263bp) protein (421aa)
LysR family transcriptional regulator, glycine cleavage system transcriptional activator n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IU24_9BRAD
LysR family transcriptional regulator, glycine cleavage system transcriptional activator {ECO:0000313|EMBL:ERF86379.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
FAD-dependent monooxygenase
SCNpilot_cont_500_bf_scaffold_572_22
unknown

Not on your lists

23707..23862
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_572_23
unknown

Not on your lists

23908..24453
DNA (546bp) protein (182aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_572_24
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24493..25578)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UA65_METS4
putative glucokinase
Uncharacterized protein {ECO:0000313|EMBL:ACA15411.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_572_25
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25823..26176
DNA (354bp) protein (118aa)
SWIB/MDM2 domain-containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LC03_9RHIZ
SWIB/MDM2 domain-containing protein {ECO:0000313|EMBL:AIQ91794.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
SWIB/MDM2 domain-containing protein
SCNpilot_cont_500_bf_scaffold_572_26
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26365..26925)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002E11C87
outer membrane protein (fragment)
Outer membrane protein {ECO:0000313|EMBL:CCD02180.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_500_bf_scaffold_572_27
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27239..28012
DNA (774bp) protein (258aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TXK6_TISMK
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AFK57494.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_572_28
unknown

Not on your lists

28104..28322
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_572_29
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28431..29864
DNA (1434bp) protein (478aa)
3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
isopropylmalate isomerase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000378F3FB rbh
SCNpilot_cont_500_bf_scaffold_572_30
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29861..30439
DNA (579bp) protein (193aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQU6_AZOBR
leuD; 3-isopropylmalate dehydratase, small subunit
Displaying items 1-30 of 108 in total

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