ggKbase home page

SCNpilot_cont_500_bf_scaffold_887

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_887_1
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..531)
DNA (531bp) protein (177aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
thiamine monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ03_9PROT
SCNpilot_cont_500_bf_scaffold_887_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(541..945)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ73_NITHX
hypothetical protein; K09966 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63724.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_887_3
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1052..1945)
DNA (894bp) protein (298aa)
Transcriptional regulator id=4341262 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Transcriptional regulator {ECO:0000313|EMBL:EME71459.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_887_4
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2023..2496)
DNA (474bp) protein (158aa)
N utilization substance protein B homolog n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YZU7_9PROT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
N utilization substance protein B; K03625 N utilization substance protein B
SCNpilot_cont_500_bf_scaffold_887_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2513..2995)
DNA (483bp) protein (161aa)
6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
6,7-dimethyl-8-ribityllumazine synthase n=3 Tax=Acidiphilium RepID=A5G0D5_ACICJ
SCNpilot_cont_500_bf_scaffold_887_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2992..4140)
DNA (1149bp) protein (383aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
3,4-dihydroxy-2-butanone-4-phosphate synthase (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
GTP cyclohydrolase II n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTE9_GRABC rbh
SCNpilot_cont_500_bf_scaffold_887_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4141..4740)
DNA (600bp) protein (200aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase subunit alpha n=1 Tax=Acidiphilium sp. PM RepID=F7S7Z7_9PROT
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:GAN78045.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_887_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4740..5840)
DNA (1101bp) protein (367aa)
riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] rbh
Riboflavin biosynthesis protein RibD n=2 Tax=Acidiphilium RepID=A5G0D8_ACICJ rbh
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_500_bf_scaffold_887_9
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6315)
DNA (459bp) protein (153aa)
NrdR family transcriptional regulator n=1 Tax=Elioraea tepidiphila RepID=UPI0003776EFC
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_500_bf_scaffold_887_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6322..7677)
DNA (1356bp) protein (452aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
Serine hydroxymethyltransferase n=2 Tax=Acidiphilium RepID=F0J1H2_ACIMA rbh
SCNpilot_cont_500_bf_scaffold_887_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7844..10687
DNA (2844bp) protein (948aa)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=H2WNV3_CAEJA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV02148.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_500_bf_scaffold_887_12
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10684..11907
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000370EEEC rbh
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:EHL95562.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_887_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11917..12708)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037D90D6
dienelactone hydrolase
Dienelactone hydrolase {ECO:0000313|EMBL:ACA18925.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_887_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12728..13159)
DNA (432bp) protein (144aa)
3-dehydroquinate dehydratase n=3 Tax=Leptospirillum RepID=J9ZB19_LEPFM
3-dehydroquinate dehydratase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_500_bf_scaffold_887_15
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13217..14101)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003625D59
Uncharacterized protein {ECO:0000313|EMBL:GAJ30654.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
endonuclease/exonuclease/phosphatase
SCNpilot_cont_500_bf_scaffold_887_16

Not on your lists

comp(14103..14507)
DNA (405bp) protein (135aa)
Cytochrome c family protein n=1 Tax=mine drainage metagenome RepID=T0YEL5_9ZZZZ
Cytochrome c family protein {ECO:0000313|EMBL:EQD30287.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_887_17
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..15528)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP04_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP65093.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_887_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15546..17204)
DNA (1659bp) protein (553aa)
MobA-like protein; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035D4BC8 rbh
Molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase {ECO:0000313|EMBL:ABQ29699.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_500_bf_scaffold_887_19
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17201..17965)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000362DA17 rbh
Xanthine and Co dehydrogenase maturation factor {ECO:0000313|EMBL:EGO94048.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
xanthine and Co dehydrogenase maturation factor; K07402 xanthine dehydrogenase accessory factor
SCNpilot_cont_500_bf_scaffold_887_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18213..18551)
DNA (339bp) protein (113aa)
Putative xanthine dehydrogenase accessory factor n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZX77_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN78472.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_887_21
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18548..19786)
DNA (1239bp) protein (413aa)
VWA containing CoxE family protein n=2 Tax=Acidiphilium RepID=A5FVR4_ACICJ rbh
VWA containing CoxE family protein; K07161 rbh
VWA containing CoxE family protein {ECO:0000313|EMBL:KDM66507.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_500_bf_scaffold_887_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19916..20449)
DNA (534bp) protein (178aa)
alanine acetyltransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B302CE
Putative acetyltransferase {ECO:0000313|EMBL:KFC64876.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase
SCNpilot_cont_500_bf_scaffold_887_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20456..21208)
DNA (753bp) protein (251aa)
ROK family protein; K00886 polyphosphate glucokinase [EC:2.7.1.63]
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CACD7
Phosphoglucose isomerase {ECO:0000313|EMBL:GAN77145.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_887_trna_1
unknown

Not on your lists

comp(21416..21496)
DNA (81bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_887_24
unknown

Not on your lists

comp(21676..21807)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_887_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22042..23562)
DNA (1521bp) protein (507aa)
Twin-arginine translocation pathway signal n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IE62_AZOC5 rbh
twin-arginine translocation pathway signal; K02035 peptide/nickel transport system substrate-binding protein rbh
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:BAF89039.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_887_26
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23807..25480)
DNA (1674bp) protein (558aa)
agaG; AgaG protein; K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000379A07A rbh
Methylhydantoinase {ECO:0000313|EMBL:KGM31366.1}; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_887_27

Not on your lists

comp(25477..26454)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D883_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM03324.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_887_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26480..28537)
DNA (2058bp) protein (686aa)
agaF; AgaF protein; K01473 N-methylhydantoinase A [EC:3.5.2.14]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000364EBCD
Methylhydantoinase {ECO:0000313|EMBL:KGM31365.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_887_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29014..30330
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E6739F
FAD dependent oxidoreductase {ECO:0000313|EMBL:GAN78131.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
oxidoreductase
Displaying items 1-30 of 38 in total

View Taxonomy