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SCNpilot_cont_500_bf_scaffold_1122

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1122_1
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..672)
DNA (672bp) protein (224aa)
UPI0003CF4AA8 related cluster n=1 Tax=unknown RepID=UPI0003CF4AA8
Membrane protein {ECO:0000313|EMBL:ESY73914.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1122_2
unknown

Not on your lists

1629..1877
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1122_3
unknown

Not on your lists

comp(2335..2862)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1122_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3144..4169)
DNA (1026bp) protein (342aa)
type 11 methyltransferase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
cyclopropane-fatty-acyl-phospholipid synthase, partial n=1 Tax=Sphingomonas wittichii RepID=UPI000367E1E0
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KKC23993.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_cont_500_bf_scaffold_1122_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4166..4936)
DNA (771bp) protein (257aa)
membrane protein, partial n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B7819F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71178.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_1122_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4933..5802)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036D5B7A
Esterase/lipase {ECO:0000313|EMBL:GAN81928.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
alpha/beta hydrolase
SCNpilot_cont_500_bf_scaffold_1122_7
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5969..6586)
DNA (618bp) protein (206aa)
Transcriptional activator chrR n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV68_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KJS37922.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
anti-ECF sigma factor ChrR; K07167 putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1122_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6583..7182)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRX5_AZOC5
DNA-directed RNA polymerase sigma subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_1122_9
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7292..8593
DNA (1302bp) protein (434aa)
NADH-ubiquinone oxidoreductase subunit 6 n=1 Tax=Rhizobium loti RepID=UPI00036F84E0
FAD dependent oxidoreductase family protein {ECO:0000313|EMBL:AID31769.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
amine oxidase
SCNpilot_cont_500_bf_scaffold_1122_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8590..9357
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B56BCE
Uncharacterized protein {ECO:0000313|EMBL:EIK90288.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K09701 hypothetical protein
SCNpilot_cont_500_bf_scaffold_1122_11
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9419..10657
DNA (1239bp) protein (413aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1W0_9PROT
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:EGY00495.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_cont_500_bf_scaffold_1122_12
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10964..11137
DNA (174bp) protein (58aa)
Lipocalin n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2HP19_BURVI
Lipocalin-like domain protein {ECO:0000313|EMBL:AIO42954.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
outer membrane lipocalin-like lipoprotein; K03098 outer membrane lipoprotein Blc
SCNpilot_cont_500_bf_scaffold_1122_13
unknown

Not on your lists

comp(11235..11369)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1122_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11529..12233)
DNA (705bp) protein (235aa)
demethylmenaquinone methyltransferase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002ECECA2
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EHL98739.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1122_15
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12326..14197
DNA (1872bp) protein (624aa)
DNA mismatch repair protein MutL n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BUZ1_GRABC rbh
DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1122_16
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14504..15232
DNA (729bp) protein (243aa)
Asp/Glu racemase; K01799 maleate isomerase [EC:5.2.1.1]
Asp/Glu/hydantoin racemase n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002F66448 rbh
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:KKB64266.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
SCNpilot_cont_500_bf_scaffold_1122_17
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15302..15862)
DNA (561bp) protein (187aa)
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:EFH11839.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFH11839.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
RNA methyltransferase, RsmD family (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLH7_9PROT
SCNpilot_cont_500_bf_scaffold_1122_18
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15864..16658)
DNA (795bp) protein (265aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1458464 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter intermedius AF2.;"
tRNA/rRNA pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S554_9PROT
SCNpilot_cont_500_bf_scaffold_1122_19
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16655..17476)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQF1_GRABC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AHJ63944.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_500_bf_scaffold_1122_20
unknown

Not on your lists

17936..18241
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1122_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18290..19789
DNA (1500bp) protein (500aa)
Serine endoprotease DegP-like {ECO:0000313|EMBL:CCC98091.1}; EC=3.4.21.- {ECO:0000313|EMBL:CCC98091.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Serine endoprotease DegP-like n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALH9_AZOBR
serine endoprotease DegP-like
SCNpilot_cont_500_bf_scaffold_1122_22
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19962..22094
DNA (2133bp) protein (711aa)
Outer membrane siderophore receptor n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVT2_GRABC rbh
outer membrane siderophore receptor rbh
Outer membrane siderophore receptor {ECO:0000313|EMBL:ABI61070.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1122_23
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22193..22444
DNA (252bp) protein (84aa)
Putative iron uptake protein n=2 Tax=Burkholderiaceae RepID=Q0K501_CUPNH
Iron transporter {ECO:0000313|EMBL:EYS91526.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
putative iron uptake protein
SCNpilot_cont_500_bf_scaffold_1122_24
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22441..24054
DNA (1614bp) protein (538aa)
PepSY domain protein (Fragment) n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A577_9PROT
PepSY domain protein {ECO:0000313|EMBL:EHL97727.1}; Flags: Fragment;; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1122_25
unknown

Not on your lists

24054..24167
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1122_26
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24167..24496
DNA (330bp) protein (110aa)
Putative membrane protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L2C1_BORA1
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ48820.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_cont_500_bf_scaffold_1122_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24641..26026
DNA (1386bp) protein (462aa)
Arabinose efflux permease family protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HKX6_9RHIZ
MFS transporter {ECO:0000313|EMBL:KGM34479.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1122_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26087..26491)
DNA (405bp) protein (135aa)
ATP synthase subunit epsilon (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=ATPE_GRABC
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_1122_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26672..28027)
DNA (1356bp) protein (452aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
atpD; ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZ62_ACIMA
SCNpilot_cont_500_bf_scaffold_1122_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28055..28861)
DNA (807bp) protein (269aa)
ATP synthase F0F1 subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=ATPG_GRABC
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Displaying items 1-30 of 51 in total

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