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SCNpilot_cont_500_bf_scaffold_1232

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1232_1
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(271..1521)
DNA (1251bp) protein (417aa)
Acetate CoA-transferase YdiF n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0C735_ALCDB
probable succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial-like
Succinyl-CoA:3-ketoacid-coenzyme A transferase 1 {ECO:0000313|EMBL:AFT68333.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
SCNpilot_cont_500_bf_scaffold_1232_2
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1612..2754
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0URP0_ALCFA rbh
Uncharacterized protein {ECO:0000313|EMBL:EJC63288.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
hypothetical protein; K09788 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1232_3
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2757..3581)
DNA (825bp) protein (275aa)
Tetratricopeptide repeat family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU98_GRABC
TPR repeat-containing protein
Tetratricopeptide repeat family protein {ECO:0000313|EMBL:AHJ62495.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_500_bf_scaffold_1232_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3680..4528
DNA (849bp) protein (283aa)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BU97_GRABC rbh
NAD dependent epimerase/dehydratase {ECO:0000313|EMBL:GAN76969.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
nucleoside-diphosphate-sugar epimerases rbh
SCNpilot_cont_500_bf_scaffold_1232_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4469..5239)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NY04_AZOS1
Hydrolase alpha/beta {ECO:0000313|EMBL:GAN76970.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1232_6
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5352..5690)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000364C181
ArsR family transcriptional regulator {ECO:0000313|EMBL:KAK47045.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
ArsR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1232_7
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5788..6861
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YV82_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS44070.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
cation diffusion facilitator family transporter; K03295 cation efflux system protein, CDF family rbh
SCNpilot_cont_500_bf_scaffold_1232_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6922..8061
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000379F1DB
Glycosyl transferase {ECO:0000313|EMBL:GAN76971.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
glycosyltransferase rbh
SCNpilot_cont_500_bf_scaffold_1232_9
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8138..8278
DNA (141bp) protein (47aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1457393 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti 1023.;"
Threonine--tRNA ligase n=1 Tax=Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 RepID=H1UMD5_ACEPA
SCNpilot_cont_500_bf_scaffold_1232_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8299..10008
DNA (1710bp) protein (570aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=SYT_GRABC
SCNpilot_cont_500_bf_scaffold_1232_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10134..10655
DNA (522bp) protein (174aa)
Translation initiation factor IF-3 n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BRP1_GRABC rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
protein translation initiation factor 3; K02520 translation initiation factor IF-3 rbh
SCNpilot_cont_500_bf_scaffold_1232_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11009..11251)
DNA (243bp) protein (81aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVN5_GRABC
SCNpilot_cont_500_bf_scaffold_1232_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11332..11748)
DNA (417bp) protein (139aa)
Histone deacetylase superfamily n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXT0_ACICJ
histone deacetylase superfamily protein
Histone deacetylase superfamily {ECO:0000313|EMBL:ABQ30412.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_500_bf_scaffold_1232_14
unknown

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11823..12035
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1232_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12222..12500)
DNA (279bp) protein (93aa)
transcriptional regulator; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
Hypothetical transcriptional regulatory protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVN6_GRABC
Two component transcriptional regulator {ECO:0000313|EMBL:GAN77798.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_1232_16
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12564..13463
DNA (900bp) protein (300aa)
fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003742A53 rbh
Transcriptional repressor sugar kinase/fructokinase {ECO:0000313|EMBL:GAN79154.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
SCNpilot_cont_500_bf_scaffold_1232_17
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13479..14771
DNA (1293bp) protein (431aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKV5_9PROT
SCNpilot_cont_500_bf_scaffold_1232_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14851..17115
DNA (2265bp) protein (755aa)
Signal transduction histidine kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2D9_9RHIZ rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EIM30381.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine kinase rbh
SCNpilot_cont_500_bf_scaffold_1232_19
Deinococcus phoenicis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

17314..18255
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI00037017F8 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:EYB67202.1}; TaxID=1476583 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus phoenicis.;"
lipase/esterase
SCNpilot_cont_500_bf_scaffold_1232_20
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18358..19488)
DNA (1131bp) protein (377aa)
Transporter n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LAZ7_9RHIZ rbh
Transporter {ECO:0000313|EMBL:EIZ81739.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1232_21
unknown

Not on your lists

comp(19485..19943)
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1232_22
unknown

Not on your lists

19977..20075
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1232_23
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20197..20580
DNA (384bp) protein (128aa)
Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADP85849.1}; TaxID=573059 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain RCH1).;"
PAS/PAC sensor hybrid histidine kinase
SCNpilot_cont_500_bf_scaffold_1232_24
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20624..21343)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FC1007
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETF03988.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
hypothetical protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1232_25
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(21289..21645)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FC1007
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
SCNpilot_cont_500_bf_scaffold_1232_26
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21647..22699)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035F8163
Uncharacterized protein {ECO:0000313|EMBL:ETF04672.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
Fe3+ ABC transporter periplasmic protein FbpA/AfuA; K02012 iron(III) transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1232_27
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22796..24577)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EC5DFA
Uncharacterized protein {ECO:0000313|EMBL:ETF04671.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
binding-protein-dependent transporters inner membrane component; K02011 iron(III) transport system permease protein
SCNpilot_cont_500_bf_scaffold_1232_28
unknown

Not on your lists

comp(24909..25280)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1232_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25511..27163
DNA (1653bp) protein (551aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B403_9RHIZ
glucose-6-phosphate 1-dehydrogenase
SCNpilot_cont_500_bf_scaffold_1232_30
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27288..28982)
DNA (1695bp) protein (565aa)
Methyl-accepting chemotaxis protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMS9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC61372.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
chemotaxis sensory transducer protein
Displaying items 1-30 of 45 in total

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