ggKbase home page

SCNpilot_cont_500_bf_scaffold_1380

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1380_1
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..874)
DNA (873bp) protein (291aa)
Fructose-bisphosphate aldolase n=1 Tax=Burkholderia sp. RPE64 RepID=R4X589_9BURK
Fructose-bisphosphate aldolase class-I {ECO:0000313|EMBL:KIG10644.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
fructose-bisphosphate aldolase
SCNpilot_cont_500_bf_scaffold_1380_2
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1148..2161)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] rbh
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVE3_GRABC rbh
SCNpilot_cont_500_bf_scaffold_1380_3
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2354..4387)
DNA (2034bp) protein (678aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
transketolase; K00615 transketolase [EC:2.2.1.1] rbh
Transketolase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPK6_9PROT
SCNpilot_cont_500_bf_scaffold_1380_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4507..5169
DNA (663bp) protein (221aa)
Asp/Glu/Hydantoin racemase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMK9_9PROT
Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:EFH11459.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1380_5
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5166..5459
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FIF0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX78579.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1380_6
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5514..7103)
DNA (1590bp) protein (530aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4Y3_9PROT rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHL97898.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1380_7
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7319..7540)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000370AF6D
Putative enzyme involved in biosynthesis of extracellular polysaccharides {ECO:0000313|EMBL:EJN12955.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein; K07145
SCNpilot_cont_500_bf_scaffold_1380_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7745..9325)
DNA (1581bp) protein (527aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0T3_9PROT rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHM00815.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1380_9

Not on your lists

comp(9359..9823)
DNA (465bp) protein (155aa)
Uncharacterized protein (Fragment) n=2 Tax=mine drainage metagenome RepID=T1ACX1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD40524.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_cont_500_bf_scaffold_1380_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10473..12767)
DNA (2295bp) protein (765aa)
coxL; carbon monoxide dehydrogenase (EC:1.2.99.2)
Carbon monoxide dehydrogenase large chain n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISQ8_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1380_11
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12815..14404)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F14CC5 rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EMS39147.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1380_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14492..15892)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00038231AC
Aminotransferase {ECO:0000313|EMBL:EHK52902.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
aminotransferase class-III
SCNpilot_cont_500_bf_scaffold_1380_13
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15903..16922)
DNA (1020bp) protein (340aa)
Acetylpolyamine aminohydrolase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FVA9_9RHOB
histone deacetylase superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_500_bf_scaffold_1380_14
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17087..17383)
DNA (297bp) protein (99aa)
Tat pathway signal sequence domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIZ1_9PROT
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFH12729.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1380_15
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17550..18926)
DNA (1377bp) protein (459aa)
Aminotransferase, class III n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISI5_RHOCS
Aminotransferase {ECO:0000313|EMBL:EWY40164.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
class III aminotransferase
SCNpilot_cont_500_bf_scaffold_1380_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19071..20342
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z1R7_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN76031.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1380_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20539..20796)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JC60_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07516.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1380_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20809..21150)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B48958
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1380_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21392..22507
DNA (1116bp) protein (372aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AYL4_PARDP rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM33411.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
mandelate racemase rbh
SCNpilot_cont_500_bf_scaffold_1380_20
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22590..23333)
DNA (744bp) protein (248aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
orotate phosphoribosyltransferase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DE8EB3
SCNpilot_cont_500_bf_scaffold_1380_21
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23403..24470
DNA (1068bp) protein (356aa)
Tartrate dehydrogenase {ECO:0000313|EMBL:EFH09896.1}; EC=1.1.1.93 {ECO:0000313|EMBL:EFH09896.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
leuB1; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] rbh
Tartrate dehydrogenase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS31_9PROT rbh
SCNpilot_cont_500_bf_scaffold_1380_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24831..26489
DNA (1659bp) protein (553aa)
aceA; isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
isocitrate lyase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB0A4
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_1380_23
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26910..27746
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002EE7013
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KKB61145.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1380_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27743..29311
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003649AF5 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJB96521.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
o-succinylbenzoate--CoA ligase
SCNpilot_cont_500_bf_scaffold_1380_25
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29443..30291)
DNA (849bp) protein (283aa)
mepA; penicillin-insensitive murein endopeptidase (EC:3.4.-.-); K07261 penicillin-insensitive murein endopeptidase [EC:3.4.24.-]
Penicillin-insensitive D-alanyl-meso-diaminopimelate endopeptidase {ECO:0000313|EMBL:ABI62347.1}; EC=3.4.-.- {ECO:0000313|EMBL:ABI62347.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Penicillin-insensitive D-alanyl-meso-diaminopimelate endopeptidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS55_GRABC
SCNpilot_cont_500_bf_scaffold_1380_26
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30293..31621)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036D299C
Uncharacterized protein {ECO:0000313|EMBL:KGE80319.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
glycosyl transferase family protein
SCNpilot_cont_500_bf_scaffold_1380_27
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31770..33119)
DNA (1350bp) protein (450aa)
mannosyltransferase n=1 Tax=Acetobacter aceti RepID=UPI0002260403 rbh
Mannosy/glycosyl ltransferase {ECO:0000313|EMBL:GAN58529.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
group 1 glycosyl transferase
SCNpilot_cont_500_bf_scaffold_1380_28
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33250..34464
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000363C6F2
Uncharacterized protein {ECO:0000313|EMBL:KGE80319.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
glycosyl transferase family protein
SCNpilot_cont_500_bf_scaffold_1380_29
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34478..35704
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000362FAA8
Uncharacterized protein {ECO:0000313|EMBL:GAN52564.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1380_30
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35810..37573)
DNA (1764bp) protein (588aa)
rfaF; ADP-heptose--LPS heptosyltransferase II; K02843 heptosyltransferase II [EC:2.4.-.-]
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036D299C
Uncharacterized protein {ECO:0000313|EMBL:ESW79697.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Displaying items 1-30 of 35 in total

View Taxonomy