ggKbase home page

SCNpilot_cont_500_bf_scaffold_1485

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1485_1
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(189..1472)
DNA (1284bp) protein (428aa)
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] rbh
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Dihydroorotase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTZ7_GRABC rbh
SCNpilot_cont_500_bf_scaffold_1485_2
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1462..2397)
DNA (936bp) protein (312aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQA0_9PROT
SCNpilot_cont_500_bf_scaffold_1485_3
unknown

Not on your lists

comp(2567..3085)
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1485_4
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3239..4162)
DNA (924bp) protein (308aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81] rbh
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D558_9BURK rbh
Phosphoglycerate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJL84761.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_cont_500_bf_scaffold_1485_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4187..5041)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4L8_ACIMA rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN75897.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K06923 rbh
SCNpilot_cont_500_bf_scaffold_1485_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5123..5512
DNA (390bp) protein (130aa)
Preprotein translocase, YajC subunit n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR41_9PROT
Protein translocase subunit YajC {ECO:0000313|EMBL:GAN75896.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
protein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_cont_500_bf_scaffold_1485_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6094..6885)
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTN5_GRABC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ62747.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_500_bf_scaffold_1485_8
unknown

Not on your lists

7466..9055
DNA (1590bp) protein (530aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1485_9
bacterium YEK0313, Bacteria

Not on your lists

9190..10821
DNA (1632bp) protein (544aa)
hydantoinase B/oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
Hydantoinase B/oxoprolinase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJK1_METNO rbh
Acetophenone carboxylase delta subunit {ECO:0000313|EMBL:CEJ13573.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_1485_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10824..12866
DNA (2043bp) protein (681aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B6AB8 rbh
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_cont_500_bf_scaffold_1485_11
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13418..14635
DNA (1218bp) protein (406aa)
5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37] rbh
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
5-aminolevulinate synthase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVE6_GRABC rbh
SCNpilot_cont_500_bf_scaffold_1485_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14834..16819
DNA (1986bp) protein (662aa)
Cytochrome c-type biogenesis protein cycK n=1 Tax=Oceanibaculum indicum P24 RepID=K2KL77_9PROT rbh
Heme lyase subunit CcmF {ECO:0000313|EMBL:KJB95594.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cycK; cytochrome c-type biogenesis protein cycK rbh
SCNpilot_cont_500_bf_scaffold_1485_13
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16821..17357
DNA (537bp) protein (179aa)
Cytochrome c biogenesis protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K5K5_9PROT
Cytochrome c biogenesis protein {ECO:0000313|EMBL:EKE78149.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
helX; cytochrome c biogenesis protein
SCNpilot_cont_500_bf_scaffold_1485_14
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17354..17926
DNA (573bp) protein (191aa)
Cytochrome C-type biogenesis protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JRS5_9PROT
Cytochrome C-type biogenesis protein {ECO:0000313|EMBL:EKE78148.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ccmH; cytochrome C-type biogenesis protein CcmH; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_cont_500_bf_scaffold_1485_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17926..19281
DNA (1356bp) protein (452aa)
Cytochrome c-type biogenesis protein cycH n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z444_AZOL4
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KJB95597.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cycH; Cytochrome c-type biogenesis protein cycH; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_cont_500_bf_scaffold_1485_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19253..19885)
DNA (633bp) protein (211aa)
hypothetical protein; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Transcriptional regulatory protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FVQ5_PELBH
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1485_17
unknown

Not on your lists

comp(19830..20612)
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1485_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20786..21268
DNA (483bp) protein (161aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IVZ1_METNO
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL62581.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_1485_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21578..25183)
DNA (3606bp) protein (1202aa)
Hydantoinase/oxoprolinase {ECO:0000313|EMBL:EFH12799.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EFH12799.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
5-oxoprolinase (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036F0342
SCNpilot_cont_500_bf_scaffold_1485_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25442..25684)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JD44_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB09873.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K09779 hypothetical protein
SCNpilot_cont_500_bf_scaffold_1485_21
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25934..27478
DNA (1545bp) protein (515aa)
Putative multicopper oxidase (Laccase-like) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7B9_AZOL4 rbh
Copper oxidase {ECO:0000313|EMBL:KJR65146.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative multicopper oxidase (laccase-like) rbh
SCNpilot_cont_500_bf_scaffold_1485_22
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27568..28863
DNA (1296bp) protein (432aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJY8_9PROT
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:EDP66925.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_500_bf_scaffold_1485_23
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29161..29901)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFD1_AGRSH rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADY67763.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_1485_24
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29996..31429
DNA (1434bp) protein (478aa)
Amidohydrolase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2M8_9PROT rbh
Amidohydrolase family protein {ECO:0000313|EMBL:EHL99611.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
amidohydrolase rbh
SCNpilot_cont_500_bf_scaffold_1485_25
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31426..32406
DNA (981bp) protein (327aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS10_9PROT rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH09899.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1485_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32690..33979
DNA (1290bp) protein (430aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DC27F8
Oligopeptide ABC transporter, ATP-binding protein AppF {ECO:0000313|EMBL:EHL99613.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1485_27
unknown

Not on your lists

comp(33918..34097)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1485_28
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34171..34818
DNA (648bp) protein (216aa)
Integral membrane protein TerC family n=1 Tax=Rhodovulum sp. PH10 RepID=J5PEC6_9RHOB
Integral membrane protein TerC family {ECO:0000313|EMBL:EJW10127.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
integral membrane protein TerC
SCNpilot_cont_500_bf_scaffold_1485_29
unknown

Not on your lists

comp(34886..35059)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1485_30
unknown

Not on your lists

35259..35483
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying items 1-30 of 73 in total

View Taxonomy