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SCNpilot_cont_500_bf_scaffold_1523

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1523_1
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..723
DNA (723bp) protein (241aa)
radical SAM enzyme, Cfr family; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=2
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HIQ6_GLUDA
SCNpilot_cont_500_bf_scaffold_1523_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1004..1477
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003782404
Cupin {ECO:0000313|EMBL:KFL32411.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1523_3
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1533..2042
DNA (510bp) protein (170aa)
Putative DNA-binding transcriptional dual regulator n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TM36_9BRAD
Putative DNA-binding transcriptional dual regulator {ECO:0000313|EMBL:CCE07524.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
putative DNA-binding transcriptional dual regulator
SCNpilot_cont_500_bf_scaffold_1523_4
unknown

Not on your lists

2059..2319
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1523_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2349..2993
DNA (645bp) protein (215aa)
Putative Glutathione S-transferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TM37_9BRAD rbh
Putative Glutathione S-transferase {ECO:0000313|EMBL:CCE07525.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
putative glutathione S-transferase rbh
SCNpilot_cont_500_bf_scaffold_1523_6
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2984..3733)
DNA (750bp) protein (250aa)
Pimeloyl-CoA biosynthesis protein BioC n=1 Tax=Burkholderia sp. (strain 383) RepID=Q399M1_BURS3
ubiquinone/menaquinone biosynthesis methylase-like protein
Pimeloyl-CoA biosynthesis protein BioC {ECO:0000313|EMBL:ABB10840.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_cont_500_bf_scaffold_1523_7
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4110..5270)
DNA (1161bp) protein (387aa)
Flagellar basal-body rod protein FlgB n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRD6_9BRAD
Epoxide hydrolase {ECO:0000313|EMBL:EJZ35293.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
epoxide hydrolase
SCNpilot_cont_500_bf_scaffold_1523_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5359..6606)
DNA (1248bp) protein (416aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036256E6
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGT78542.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1523_9
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6671..7396)
DNA (726bp) protein (242aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHV7_BORPD rbh
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Putative branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAP41995.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_1523_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7401..9200)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQD2_BRAJP
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGT78540.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_1523_11
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9200..10156)
DNA (957bp) protein (319aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJH5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ30907.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_1523_12
unknown

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10221..10517
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1523_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10525..11289)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000376D476
Metallophosphoesterase {ECO:0000313|EMBL:EWY40287.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
metallophosphoesterase
SCNpilot_cont_500_bf_scaffold_1523_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11664..12572
DNA (909bp) protein (303aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A1C7_9PROT
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_500_bf_scaffold_1523_15
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12603..15203
DNA (2601bp) protein (867aa)
CAIB/BAIF family n=1 Tax=Burkholderia sp. YI23 RepID=G8MGL4_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:ETY83548.1}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
CAIB/BAIF family protein rbh
SCNpilot_cont_500_bf_scaffold_1523_16
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15208..16332
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MGL5_9BURK rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETY83551.2}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1523_17
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16344..16742
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MGL6_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET92733.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_cont_500_bf_scaffold_1523_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16982..18208)
DNA (1227bp) protein (409aa)
LuxA n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EE5201
Luciferase {ECO:0000313|EMBL:ETR76537.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
LuxA-like protein
SCNpilot_cont_500_bf_scaffold_1523_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18370..19344
DNA (975bp) protein (325aa)
PDZ/DHR/GLGF domain-containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LD99_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAN78282.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
PDZ/DHR/GLGF domain-containing protein
SCNpilot_cont_500_bf_scaffold_1523_20
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19346..20011
DNA (666bp) protein (222aa)
Zn-dependent hydrolase, glyoxalase II family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTM4_GRABC rbh
zinc-dependent hydrolase rbh
Zn-dependent hydrolase, glyoxalase II family {ECO:0000313|EMBL:ABI61828.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1523_21
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20224..20748)
DNA (525bp) protein (175aa)
Transcriptional regulator, MerR family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTD8_GRABC
Transcriptional regulator, MerR family protein {ECO:0000313|EMBL:AHJ62851.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
MerR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1523_22
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20745..21056)
DNA (312bp) protein (104aa)
Integration host factor subunit alpha n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTD9_GRABC
integration host factor subunit alpha; K04764 integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1523_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21163..22131)
DNA (969bp) protein (323aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
fabH; 3-oxoacyl-ACP synthase III (EC:2.3.1.180); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Acidiphilium sp. PM RepID=F7S2Q0_9PROT rbh
SCNpilot_cont_500_bf_scaffold_1523_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22228..23121)
DNA (894bp) protein (298aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15]
Phosphate acyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPH7_9PROT
SCNpilot_cont_500_bf_scaffold_1523_25
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23185..23388)
DNA (204bp) protein (68aa)
50S ribosomal protein L32 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZL76_GLUDA
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_500_bf_scaffold_1523_26
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23574..24068)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QHH7_GLUHA
Uncharacterized protein {ECO:0000313|EMBL:EFG83550.1}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1523_27
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24065..24616)
DNA (552bp) protein (184aa)
Ubiquinol-cytochrome C chaperone n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVN3_9PROT
Ubiquinol-cytochrome C chaperone {ECO:0000313|EMBL:EHM02996.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
ubiquinol-cytochrome C chaperone superfamily protein
SCNpilot_cont_500_bf_scaffold_1523_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24954..25478
DNA (525bp) protein (175aa)
Lipoprotein (SmpA/OmlA family) n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTE4_GRABC
Lipoprotein SmpA/OmlA {ECO:0000313|EMBL:GAN77095.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SmpA/OmlA family lipoprotein
SCNpilot_cont_500_bf_scaffold_1523_29
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25730..26026
DNA (297bp) protein (99aa)
Putative TRAP C4-dicarboxylate transport system, DctQ subunit (Small permease component) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YX28_BRASO
TRAP C4-dicarboxylate transport system subunit DctQ
Sugar transporter {ECO:0000313|EMBL:KJC52704.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_500_bf_scaffold_1523_30
unknown

Not on your lists

comp(26169..26291)
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying items 1-30 of 40 in total

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