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SCNpilot_cont_500_bf_scaffold_1762

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1762_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5..412)
DNA (408bp) protein (136aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=3 Tax=Acidiphilium RepID=RPOZ_ACICJ
SCNpilot_cont_500_bf_scaffold_1762_2
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(483..989)
DNA (507bp) protein (169aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:ABI61885.1}; EC=2.7.6.3 {ECO:0000313|EMBL:ABI61885.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTG7_GRABC
SCNpilot_cont_500_bf_scaffold_1762_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1121..1726
DNA (606bp) protein (202aa)
Hypothetical cytosolic protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTG8_GRABC rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN76838.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative cytoplasmic protein rbh
SCNpilot_cont_500_bf_scaffold_1762_4
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1857..2297
DNA (441bp) protein (147aa)
HTH-type transcriptional regulator nsrR n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TX82_TISMK
nsrR; HTH-type transcriptional regulator nsrR
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_cont_500_bf_scaffold_1762_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2383..2964)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000380480D
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
glutathione peroxidase
SCNpilot_cont_500_bf_scaffold_1762_6
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2957..3628)
DNA (672bp) protein (224aa)
Oxidoreductase, molybdopterin binding protein n=3 Tax=Acidiphilium RepID=A5FZS5_ACICJ rbh
putative oxidoreductase; K07147 rbh
Oxidoreductase, molybdopterin binding {ECO:0000313|EMBL:EGO94937.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_500_bf_scaffold_1762_7
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3770..4477)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SWD1_POLSQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP33795.1}; TaxID=312153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 /; CIP 109841 / QLW-P1DMWA-1).;"
SCNpilot_cont_500_bf_scaffold_1762_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4609..5370
DNA (762bp) protein (254aa)
DNA repair protein RecO n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZY22_9PROT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
DNA repair protein recO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_cont_500_bf_scaffold_1762_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5360..7483
DNA (2124bp) protein (708aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
DNA topoisomerase IV subunit A (EC:5.99.1.-); K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase 4 subunit A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTF9_GRABC
SCNpilot_cont_500_bf_scaffold_1762_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7672..8406
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMH0_9PROT
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76137.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1762_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8352..8891
DNA (540bp) protein (180aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4F9_9PROT
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76137.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1762_12
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9156..9545)
DNA (390bp) protein (130aa)
Cytochrome O ubiquinol oxidase protein subunit IV n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TPW1_9BRAD
Cytochrome O ubiquinol oxidase protein subunit IV {ECO:0000313|EMBL:CCE08499.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
cyoD; cytochrome O ubiquinol oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD
SCNpilot_cont_500_bf_scaffold_1762_13
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9542..10237)
DNA (696bp) protein (232aa)
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:CDX37681.1}; EC=1.10.3.- {ECO:0000313|EMBL:CDX37681.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
cytochrome c oxidase subunit iii; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome c oxidase subunit III n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QKS8_METTR rbh
SCNpilot_cont_500_bf_scaffold_1762_14
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10234..12246)
DNA (2013bp) protein (671aa)
UPI0003CED17F related cluster n=1 Tax=unknown RepID=UPI0003CED17F rbh
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:ESW85140.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
cytochrome o ubiquinol oxidase, subunit I
SCNpilot_cont_500_bf_scaffold_1762_15
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12250..13200)
DNA (951bp) protein (317aa)
UPI0003CEE165 related cluster n=1 Tax=unknown RepID=UPI0003CEE165 rbh
Ubiquinol oxidase polypeptide II {ECO:0000313|EMBL:ESW85139.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ubiquinol oxidase, subunit ii
SCNpilot_cont_500_bf_scaffold_1762_16
Saccharibacter sp. AM169, Saccharibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13612..14109
DNA (498bp) protein (166aa)
MucR family transcriptional regulator n=1 Tax=Acetobacter aceti RepID=UPI000226019F
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDG33661.1}; TaxID=1343158 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Saccharibacter.;" source="Saccharibacter sp. AM169.;"
SCNpilot_cont_500_bf_scaffold_1762_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14199..16526)
DNA (2328bp) protein (776aa)
Putative carbon-monoxide dehydrogenase, large subunit n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSR6_9PROT rbh
Carbon monoxide dehydrogenase/molybdopterin binding aldehyde oxidase {ECO:0000313|EMBL:GAN75800.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative oxidoreductase
SCNpilot_cont_500_bf_scaffold_1762_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16598..17815
DNA (1218bp) protein (406aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
ackA2; acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PM2_BRADU
SCNpilot_cont_500_bf_scaffold_1762_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17846..18589)
DNA (744bp) protein (248aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q7G1_RHOPT
Carnitine dehydratase {ECO:0000313|EMBL:ETW97572.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_500_bf_scaffold_1762_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..19042)
DNA (438bp) protein (146aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q132R0_RHOPS
Carnitine dehydratase {ECO:0000313|EMBL:ETW97572.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_500_bf_scaffold_1762_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19115..20167)
DNA (1053bp) protein (351aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:KJC42192.1}; EC=1.1.1.41 {ECO:0000313|EMBL:KJC42192.1};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
isocitrate dehydrogenase (NAD(+)); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] rbh
Isocitrate dehydrogenase (NAD(+)) n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U960_METS4 rbh
SCNpilot_cont_500_bf_scaffold_1762_trna_1
unknown

Not on your lists

comp(20331..20418)
DNA (88bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1762_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20495..21067)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVR3_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN76481.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K09857 hypothetical protein
SCNpilot_cont_500_bf_scaffold_1762_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21170..22855)
DNA (1686bp) protein (562aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037022BD
Paraquat-inducible protein B {ECO:0000313|EMBL:GAN76482.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
paraquat-inducible protein B; K06192 paraquat-inducible protein B
SCNpilot_cont_500_bf_scaffold_1762_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22852..24063)
DNA (1212bp) protein (404aa)
Paraquat-inducible protein A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVR5_GRABC
Paraquat-inducible protein A {ECO:0000313|EMBL:GAN76483.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
paraquat-inducible protein A; K03808 paraquat-inducible protein A
SCNpilot_cont_500_bf_scaffold_1762_25
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24292..24876)
DNA (585bp) protein (195aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8S0_9PROT
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:EHL95447.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
outer membrane autotransporter barrel domain-containing protein
Displaying 26 items

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