ggKbase home page

SCNpilot_cont_500_bf_scaffold_3809

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3809_1
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1372
DNA (1371bp) protein (457aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Citreicella sp. 357 RepID=I1AX10_9RHOB rbh
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KEJ94396.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
TRAP transporter 4TM/12TM fusion protein
SCNpilot_cont_500_bf_scaffold_3809_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1659..2054)
DNA (396bp) protein (132aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Uncharacterized protein n=2 Tax=Azospirillum brasilense RepID=G8AFJ9_AZOBR
conserved protein of unknown function; Alkylhydroperoxidase domain
SCNpilot_cont_500_bf_scaffold_3809_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2138..2932
DNA (795bp) protein (265aa)
Enoyl-CoA hydratase id=1746157 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
paaG; enoyl-CoA hydratase
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_cont_500_bf_scaffold_3809_4
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3051..3935)
DNA (885bp) protein (295aa)
N-formylglutamate amidohydrolase; K01458 N-formylglutamate deformylase [EC:3.5.1.68]
N-formylglutamate amidohydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0H5_9PROT rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EHM00997.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_500_bf_scaffold_3809_trna_1
unknown

Not on your lists

4027..4098
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_3809_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4089..4460)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1T6_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48444.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_3809_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4534..5529)
DNA (996bp) protein (332aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophan--tRNA ligase; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] rbh
Tryptophan--tRNA ligase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPD9_GRABC rbh
SCNpilot_cont_500_bf_scaffold_3809_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5532..7124)
DNA (1593bp) protein (531aa)
Virulence factor mviN n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPE5_GRABC rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
virulence factor mviN; K03980 virulence factor rbh
SCNpilot_cont_500_bf_scaffold_3809_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7499..7819)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IN09_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69402.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_3809_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7876..9003)
DNA (1128bp) protein (376aa)
FMN-dependent alpha-hydroxy acid dehydrogenase glycolate oxidase (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] rbh
Putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; Glycolate oxidase id=3831002 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_cont_500_bf_scaffold_3809_10
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9000..9536)
DNA (537bp) protein (179aa)
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; K01911 O-succinylbenzoic acid--CoA ligase [EC:6.2.1.26]
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=2 Tax=Saccharomonospora azurea RepID=H8GEQ3_9PSEU
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EHK86820.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
Displaying 11 items

View Taxonomy