ggKbase home page

SCNpilot_cont_500_bf_scaffold_19147

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_19147_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..490)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1Y5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36602.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amidase
SCNpilot_cont_500_bf_scaffold_19147_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1021..2022
DNA (1002bp) protein (334aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S-adenosyl-L-methionine-dependent methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] rbh
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P534_9BRAD rbh
SCNpilot_cont_500_bf_scaffold_19147_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2024..2440
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QR59_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06269.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_19147_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2437..2790
DNA (354bp) protein (118aa)
penicillin-binding protein n=1 Tax=Afipia birgiae RepID=UPI00031F6FC2
Uncharacterized protein {ECO:0000313|EMBL:EKS35836.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
division-specific transpeptidase, penicillin-binding protein
SCNpilot_cont_500_bf_scaffold_19147_5
unknown

Not on your lists

comp(2787..3056)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_19147_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3075..4106
DNA (1032bp) protein (344aa)
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:EFI52268.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EFI52268.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
peptidoglycan glycosyltransferase; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129]
Peptidoglycan glycosyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2T8_9BRAD
SCNpilot_cont_500_bf_scaffold_19147_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4174..4686
DNA (513bp) protein (171aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2T7_9BRAD
Displaying 7 items

View Taxonomy