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SCNpilot_cont_500_bf_scaffold_3368

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3368_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLK2_9BRAD
ABC transporter permease protein {ECO:0000313|EMBL:EGP08299.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator
SCNpilot_cont_500_bf_scaffold_3368_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..1280)
DNA (897bp) protein (299aa)
High-affinity branched-chain amino acid transport system permease protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKC9_9BRAD rbh
High-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:EGP08298.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_3368_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1346..2509)
DNA (1164bp) protein (388aa)
ABC-type transport system periplasmic substrate-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKC8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42464.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
extracellular ligand-binding receptor
SCNpilot_cont_500_bf_scaffold_3368_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2566..2946)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PVR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08296.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3368_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3159..3677)
DNA (519bp) protein (173aa)
oxygenase n=1 Tax=Afipia birgiae RepID=UPI00030E0293 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42461.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
FMN-binding flavin reductase
SCNpilot_cont_500_bf_scaffold_3368_6
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3879..5348)
DNA (1470bp) protein (490aa)
2-hydroxymuconic semialdehyde dehydrogenase; K10217 aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32]
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Methyloversatilis universalis RepID=UPI00037682F6
Aldehyde dehydrogenase {ECO:0000313|EMBL:EDM83237.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
SCNpilot_cont_500_bf_scaffold_3368_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5678..6154)
DNA (477bp) protein (159aa)
MarR family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B2AE8
marR; regulatory protein
Regulatory protein {ECO:0000313|EMBL:BAF90189.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_3368_8
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6303..7979)
DNA (1677bp) protein (559aa)
Thiamine pyrophosphate protein TPP binding domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G3F2_9BURK
Thiamine pyrophosphate protein TPP binding domain protein {ECO:0000313|EMBL:EDT09473.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
thiamine pyrophosphate protein
SCNpilot_cont_500_bf_scaffold_3368_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8025..9527)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN60_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25402.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
SCNpilot_cont_500_bf_scaffold_3368_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9524..9973)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11D56_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG64669.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_3368_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10049..11017)
DNA (969bp) protein (323aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKK8_POLNA
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM36186.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_cont_500_bf_scaffold_3368_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11071..12495)
DNA (1425bp) protein (475aa)
3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D4Z9_PELTS
UbiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_3368_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12604..13134)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGP1_9RHOB
TIGR02444 family protein {ECO:0000313|EMBL:CDN56892.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3368_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13173..13736)
DNA (564bp) protein (188aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-); K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INR8_RHOCS
SCNpilot_cont_500_bf_scaffold_3368_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14141..15637)
DNA (1497bp) protein (499aa)
4-hydroxyphenylacetate 3-hydroxylase; K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9] rbh
4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSJ4_AZOC5 rbh
4-hydroxyphenylacetate 3-hydroxylase {ECO:0000313|EMBL:BAF90187.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_3368_16
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16125..17894
DNA (1770bp) protein (590aa)
Allophanate hydrolase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z0S4_9BRAD rbh
allophanate hydrolase rbh
Allophanate hydrolase {ECO:0000313|EMBL:BAM86663.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_3368_17
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17996..18949
DNA (954bp) protein (318aa)
NMT1/THI5 like domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJB5_METS4 rbh
NMT1/THI5-like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
NMT1/THI5 like domain protein {ECO:0000313|EMBL:ACA14965.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_3368_18
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18946..19809
DNA (864bp) protein (288aa)
ABC transporter permease n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037DF12A rbh
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:GAN51062.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
binding-protein-dependent transporters inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3368_19
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19802..20581
DNA (780bp) protein (260aa)
ABC transporter related n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJB7_METS4 rbh
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter related {ECO:0000313|EMBL:ACA14967.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_3368_20
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20653..21600)
DNA (948bp) protein (316aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S5L9_9BURK rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EHP42101.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_3368_21
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21708..23192
DNA (1485bp) protein (495aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Burkholderia sp. YI23 RepID=G8MNV6_9BURK
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AET94495.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_cont_500_bf_scaffold_3368_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23244..23366)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA70_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07693.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_3368_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23459..24529)
DNA (1071bp) protein (357aa)
MFS transporter n=2 Tax=Oligotropha carboxidovorans RepID=B6JGE0_OLICO
MFS transporter
MFS transporter {ECO:0000313|EMBL:AEI06075.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 23 items

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