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SCNpilot_cont_500_bf_scaffold_6117

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6117_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..473
DNA (471bp) protein (157aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Bradyrhizobiaceae RepID=F7QH97_9BRAD
SCNpilot_cont_500_bf_scaffold_6117_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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557..880
DNA (324bp) protein (108aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hisE; phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Afipia birgiae RepID=UPI0002F378CF
SCNpilot_cont_500_bf_scaffold_6117_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1387..1833
DNA (447bp) protein (149aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
pantothenate kinase; K00867 type I pantothenate kinase [EC:2.7.1.33]
pantothenate kinase n=1 Tax=Afipia birgiae RepID=UPI0002F64408
SCNpilot_cont_500_bf_scaffold_6117_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2001..3056)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1X4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34709.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_6117_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3156..5405)
DNA (2250bp) protein (750aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NUA1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33897.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
two-component hybrid sensor and regulator
SCNpilot_cont_500_bf_scaffold_6117_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5543..6007)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXJ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33896.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6117_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6170..6970)
DNA (801bp) protein (267aa)
Mg chelatase-like protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWL2_9BRAD
Mg chelatase-like protein {ECO:0000313|EMBL:EKS34712.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Mg chelatase-like protein; K07391 magnesium chelatase family protein
SCNpilot_cont_500_bf_scaffold_6117_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7970..8620
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E29EA1
Uncharacterized protein {ECO:0000313|EMBL:EFI52699.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6117_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8650..9492)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E44C75 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09364.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_6117_10
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9670..11874)
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003761FAB rbh
Uncharacterized protein {ECO:0000313|EMBL:EZH77438.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
siderophore receptor protein; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_6117_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12033..12977)
DNA (945bp) protein (315aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
glutathione synthetase; K01920 glutathione synthase [EC:6.3.2.3] rbh
Glutathione synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXH9_9BRAD rbh
SCNpilot_cont_500_bf_scaffold_6117_12
unknown

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comp(13277..13360)
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 12 items

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