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SCNpilot_cont_500_bf_scaffold_1055

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1055_1
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(285..2774)
DNA (2490bp) protein (830aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI00039568C4 rbh
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI83027.1}; Flags: Precursor;; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
SCNpilot_cont_500_bf_scaffold_1055_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2901..3857)
DNA (957bp) protein (319aa)
FecR protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WV78_9BRAD rbh
FecR protein {ECO:0000313|EMBL:EAQ36110.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
FecR protein; K07165 transmembrane sensor rbh
SCNpilot_cont_500_bf_scaffold_1055_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4038..4541)
DNA (504bp) protein (168aa)
FecI-like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WV79_9BRAD rbh
FecI-like protein {ECO:0000313|EMBL:EAQ36111.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
fec I like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_1055_4
unknown

Not on your lists

4745..4924
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1055_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5539..5724
DNA (186bp) protein (62aa)
UPI0003CDF941 related cluster n=1 Tax=unknown RepID=UPI0003CDF941
Type I restriction enzyme EcoKI subunit R {ECO:0000313|EMBL:CEG09837.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_1055_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5721..6074
DNA (354bp) protein (118aa)
Conjugal transfer protein trbE n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW1_OLICO
trbE2; conjugal transfer protein trbE; K03199 type IV secretion system protein VirB4
Conjugal transfer protein trbE {ECO:0000313|EMBL:AEI05262.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1055_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6014..6976
DNA (963bp) protein (321aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Oligotropha carboxidovorans RepID=B6JJW0_OLICO
trbJ2; P-type conjugal transfer protein TrbJ
P-type conjugal transfer protein TrbJ {ECO:0000313|EMBL:AEI05263.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1055_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7035..8027
DNA (993bp) protein (331aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV6_OLICO rbh
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AEI05267.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1055_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8024..9181
DNA (1158bp) protein (386aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=F8BJW8_OLICM
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05268.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1055_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9184..9405
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05269.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1055_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9550..9840
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP45_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42491.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_500_bf_scaffold_1055_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9837..10190
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030B7912
Uncharacterized protein {ECO:0000313|EMBL:ENY79957.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1055_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10187..10585
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP47_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42493.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_500_bf_scaffold_1055_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10582..12240
DNA (1659bp) protein (553aa)
Resolvase domain n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP48_RHOPX rbh
resolvase domain-containing protein rbh
Resolvase domain {ECO:0000313|EMBL:ADU42494.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_500_bf_scaffold_1055_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12423..13784
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5N4_9BRAD
Integrase {ECO:0000313|EMBL:ETR77534.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
phage integrase
SCNpilot_cont_500_bf_scaffold_1055_16
unknown

Not on your lists

13823..14074
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1055_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14294..15574)
DNA (1281bp) protein (427aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1] rbh
Capsule biosynthesis enzymes related protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VD01_RHILV rbh
Capsule biosynthesis enzymes related protein {ECO:0000313|EMBL:EJC71186.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_cont_500_bf_scaffold_1055_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15564..15911)
DNA (348bp) protein (116aa)
Putative DNA binding protein n=2 Tax=Rhizobium leguminosarum RepID=Q1M6J3_RHIL3
putative DNA binding protein
Putative DNA binding protein {ECO:0000313|EMBL:CAK03140.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_500_bf_scaffold_1055_19
bacterium YEK0313, Bacteria

Not on your lists

16066..16506
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037AA502
Uncharacterized protein {ECO:0000313|EMBL:CEJ12499.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1055_20
bacterium YEK0313, Bacteria

Not on your lists

comp(16529..17563)
DNA (1035bp) protein (345aa)
Patatin n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138G5_RHOPS rbh
Putative sporulation hydrolase CotR {ECO:0000313|EMBL:CEJ12500.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
patatin rbh
SCNpilot_cont_500_bf_scaffold_1055_21
bacterium YEK0313, Bacteria

Not on your lists

comp(17560..18012)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KX3_MESSB
Uncharacterized protein {ECO:0000313|EMBL:CEJ12501.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1055_22
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18012..19259)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KX2_MESSB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABG61953.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_1055_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19445..19765
DNA (321bp) protein (107aa)
Transcriptional regulator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138G2_RHOPS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ABE39527.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_1055_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19762..20685
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F25C49 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE39528.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_1055_25
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20890..23322)
DNA (2433bp) protein (811aa)
UPI0003CEEB63 related cluster n=1 Tax=unknown RepID=UPI0003CEEB63
Uncharacterized protein {ECO:0000313|EMBL:KFD25691.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1055_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23319..23954)
DNA (636bp) protein (212aa)
UPI0003CEB5F9 related cluster n=1 Tax=unknown RepID=UPI0003CEB5F9
Uncharacterized protein {ECO:0000313|EMBL:CEG10593.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_1055_27
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23951..25705)
DNA (1755bp) protein (585aa)
UPI0003CEFE0B related cluster n=1 Tax=unknown RepID=UPI0003CEFE0B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFD25689.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1055_trna_1
unknown

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comp(25875..25948)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1055_28
unknown

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25898..26152
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1055_29
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26327..26827)
DNA (501bp) protein (167aa)
Putative resolvase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESP2_BRASB
resolvase
Putative resolvase {ECO:0000313|EMBL:ABQ39186.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying items 1-30 of 31 in total

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