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SCNpilot_cont_500_bf_scaffold_1963

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1963_1
unknown

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3..80
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1963_2
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(162..1553)
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003704040
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AID29589.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
major facilitator transporter; K08166 MFS transporter, DHA2 family, methylenomycin A resistance protein rbh
SCNpilot_cont_500_bf_scaffold_1963_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1906..2874
DNA (969bp) protein (323aa)
Agmatinase {ECO:0000313|EMBL:EHK55408.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EHK55408.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
speB; agmatinase (EC:3.5.3.11); K01480 agmatinase [EC:3.5.3.11]
Agmatinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV10_9RHIZ
SCNpilot_cont_500_bf_scaffold_1963_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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3005..3346
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TXU7_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH83144.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1963_5
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3327..3908
DNA (582bp) protein (194aa)
Uncharacterized protein n=4 Tax=Amycolatopsis mediterranei RepID=I7E565_AMYMS
Uncharacterized protein {ECO:0000313|EMBL:KDN17591.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1963_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3965..4906
DNA (942bp) protein (314aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase; K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV09_9RHIZ
SCNpilot_cont_500_bf_scaffold_1963_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4952..5359)
DNA (408bp) protein (136aa)
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X9W5_RHIFR
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:AFL52671.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_500_bf_scaffold_1963_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5492..6091
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRX7_9RHIZ
Trp repressor binding protein; K03809 Trp repressor binding protein
SCNpilot_cont_500_bf_scaffold_1963_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6122..7138)
DNA (1017bp) protein (339aa)
Methionine synthase I {ECO:0000313|EMBL:EHK56206.1}; EC=2.1.1.13 {ECO:0000313|EMBL:EHK56206.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
homocysteine S-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
methionine synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3B427
SCNpilot_cont_500_bf_scaffold_1963_10
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7340..7771)
DNA (432bp) protein (144aa)
inosine-5-monophosphate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DF9C7B
CBS domain-containing putative signal transduction protein {ECO:0000313|EMBL:KFB10045.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
putative signal-transduction protein containing cAMP-binding and CBS domains
SCNpilot_cont_500_bf_scaffold_1963_11
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7895..8686)
DNA (792bp) protein (264aa)
ATPase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037E04E4
Chaperone required for the assembly of F1-ATPase {ECO:0000313|EMBL:ETA72962.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
ATP12 ATPase
SCNpilot_cont_500_bf_scaffold_1963_12
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8755..9744)
DNA (990bp) protein (330aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
pseudouridine synthase n=1 Tax=Hoeflea sp. 108 RepID=UPI000369807F
pseudouridine synthase, RluA family
SCNpilot_cont_500_bf_scaffold_1963_13
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10229..12001
DNA (1773bp) protein (591aa)
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA {ECO:0000256|HAMAP-Rule:MF_01728}; EC=3.6.3.42 {ECO:0000256|HAMAP-Rule:MF_01728};; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Glucan exporter ATP-binding protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KP76_MESAW
glucan exporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1963_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12076..13314)
DNA (1239bp) protein (413aa)
UPI0003CDD238 related cluster n=1 Tax=unknown RepID=UPI0003CDD238
ATPase AAA {ECO:0000313|EMBL:EXL01817.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ATPase AAA; K07478 putative ATPase
SCNpilot_cont_500_bf_scaffold_1963_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13414..14937)
DNA (1524bp) protein (508aa)
protease Do (EC:3.4.21.108)
serine protease n=1 Tax=Hoeflea sp. 108 RepID=UPI000364F9B8
Heat shock protein htrA-like protein {ECO:0000313|EMBL:EHK55280.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_500_bf_scaffold_1963_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15045..15716)
DNA (672bp) protein (224aa)
Ankyrin repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BIE6_OLICM
ankyrin
Ankyrin repeat protein {ECO:0000313|EMBL:AEI07004.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1963_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15805..16236)
DNA (432bp) protein (144aa)
50S ribosomal protein L17 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N2C5_9RHIZ
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_500_bf_scaffold_1963_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16315..17271)
DNA (957bp) protein (319aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVC9_9RHIZ
SCNpilot_cont_500_bf_scaffold_1963_19
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17379..17768)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=13 Tax=Mesorhizobium RepID=RS11_RHILO
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_cont_500_bf_scaffold_1963_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17896..18264)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000301C497
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_cont_500_bf_scaffold_1963_21
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18468..19052)
DNA (585bp) protein (195aa)
adk; adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="
adenylate kinase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039CEB97
SCNpilot_cont_500_bf_scaffold_1963_22
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19049..20389)
DNA (1341bp) protein (447aa)
UPI0003CF3140 related cluster n=1 Tax=unknown RepID=UPI0003CF3140 rbh
preprotein translocase, SecY subunit rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_1963_23
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20538..21011)
DNA (474bp) protein (158aa)
50S ribosomal protein L15 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDS2_MESOW
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_cont_500_bf_scaffold_1963_24
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21031..21207)
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=RL30_MESSB
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying 24 items

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