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SCNpilot_cont_500_bf_scaffold_235_315

Organism: SCNPILOT_CONT_500_BF_Mesorhizobium_64_28

partial RP 27 / 55 MC: 1 BSCG 29 / 51 ASCG 10 / 38 MC: 2
Location: comp(332044..332610)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CDEAC8 related cluster n=1 Tax=unknown RepID=UPI0003CDEAC8 similarity UNIREF
DB: UNIREF100
  • Identity: 71.6
  • Coverage: 176.0
  • Bit_score: 247
  • Evalue 8.60e-63
RNA polymerase sigma factor {ECO:0000313|EMBL:ESW81034.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.6
  • Coverage: 176.0
  • Bit_score: 247
  • Evalue 1.20e-62
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.2
  • Coverage: 182.0
  • Bit_score: 241
  • Evalue 2.50e-61

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Taxonomy

Mesorhizobium sp. LSJC280B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGCGGGGCAAGACGGCAGTGGCGAATGGCGAGCGCTCCGCCGAGCTTTTCCGCGAGGTGGTTCTTCCCCATCTCGCGGACGCCCTGTCGCTCGCCCGTTGGCTGACCGGCAACGCCCATGACGCCGAGGACGTGGTGCAGGAGGCCTGCCTCAAGGCGCATGCCGGCATCGGGAGCTACCAGGGCGGGAATGCCCGCGCCTGGCTGCTGGCGATCGTACGCAACGCCTCCTACACCTGGCTTGCGCGCAACCGTTCGCGCACGCTGGTGGGCGTCGGCGACATCGGCGATCTCGAAGACCTGGCGCCGCCTTCCAACCCGACCACGGGGGAGGGCAACCCTGAGGCGGCGCTGATCGCGCGGGCGGACAGCGCTGTGCTGGAAAGGGCGATCGAGGCGCTTCCGCACGCCTTTCGCGAGATCGTGGTCCTGCGCGACCTCAACGGGCTGAGCTATCGCGAGATCGCGGCAATGCTCGGCCTGCCCATCGGCACGGTGATGTCGCGCCTGGCGCGGGCGCGCGGACGGTTGATGGCTGAAATCAGGAGTTCCGATGCGCGAGCATGA
PROTEIN sequence
Length: 189
MRGKTAVANGERSAELFREVVLPHLADALSLARWLTGNAHDAEDVVQEACLKAHAGIGSYQGGNARAWLLAIVRNASYTWLARNRSRTLVGVGDIGDLEDLAPPSNPTTGEGNPEAALIARADSAVLERAIEALPHAFREIVVLRDLNGLSYREIAAMLGLPIGTVMSRLARARGRLMAEIRSSDARA*