ggKbase home page

SCNpilot_cont_500_bf_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 335 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_235_1
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..511)
DNA (510bp) protein (170aa)
Fis family transcriptional regulator; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
L-fuculose 1-phosphate aldolase {ECO:0000313|EMBL:ABL72659.1}; EC=4.1.2.17 {ECO:0000313|EMBL:ABL72659.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
L-fuculose 1-phosphate aldolase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BAW5_PARDP
SCNpilot_cont_500_bf_scaffold_235_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(687..1262)
DNA (576bp) protein (192aa)
S-methyl-5'-thioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
Purine nucleoside phosphorylase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KAK3_NITWC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_235_3
bacterium YEK0313, Bacteria

Not on your lists

comp(1280..2317)
DNA (1038bp) protein (346aa)
hypothetical protein; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
eIF-2B alpha/beta/delta-related uncharacterized protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SAV2_GEOOG
Methylthioribose-1-phosphate isomerase {ECO:0000313|EMBL:CEJ10809.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_235_4
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2553..3950)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TBN6_9RHIZ
MmgE/PrpD family protein {ECO:0000313|EMBL:AHF76589.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
PrpD; hypothetical protein
SCNpilot_cont_500_bf_scaffold_235_5
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3953..4981)
DNA (1029bp) protein (343aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ6_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11794.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
dppF; dipeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_235_6
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4968..5984)
DNA (1017bp) protein (339aa)
UPI0003CFA5D5 related cluster n=1 Tax=unknown RepID=UPI0003CFA5D5
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ18364.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
dppD2; oligopeptide ATP-binding ABC transporter protein; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_235_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5984..6895)
DNA (912bp) protein (304aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ4_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH11792.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
binding-protein-dependent transporter inner membrane component family protein 46; K15582 oligopeptide transport system permease protein
SCNpilot_cont_500_bf_scaffold_235_8
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6892..7854)
DNA (963bp) protein (321aa)
Putative oligopeptide ABC transporter, permease protein AppB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A3N5_9PROT
Putative transmembrane ABC transporter {ECO:0000313|EMBL:AHF75787.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
dppB; dipeptide transport protein 1 (ABC superfamily, membrane component); K02033 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_235_9
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7897..9297)
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4PCG4_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJO31492.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_235_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9309..11078)
DNA (1770bp) protein (590aa)
Uncharacterized protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QKP0_9RHOB
peptidase M28
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_500_bf_scaffold_235_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11169..12743)
DNA (1575bp) protein (525aa)
Extracellular solute-binding protein, family 5 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNE0_9PROT
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EDP65327.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
peptide ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_235_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12813..13949)
DNA (1137bp) protein (379aa)
Amino acid aldolase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVV6_9BURK
Amino acid aldolase {ECO:0000313|EMBL:EHL23502.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
amino acid aldolase
SCNpilot_cont_500_bf_scaffold_235_13
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13949..15685)
DNA (1737bp) protein (579aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003699EE5 rbh
Hydantoinase B/oxoprolinase {ECO:0000313|EMBL:AHF76592.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
SCNpilot_cont_500_bf_scaffold_235_14
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15685..17772)
DNA (2088bp) protein (696aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E3381 rbh
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:AHF76591.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
SCNpilot_cont_500_bf_scaffold_235_15
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(17769..19166)
DNA (1398bp) protein (466aa)
Peptidase M20 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C925_SPHTD
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:ACZ40318.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_500_bf_scaffold_235_16
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19539..21650
DNA (2112bp) protein (704aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B6AB8
Hydantoinase/5-oxoprolinase {ECO:0000313|EMBL:AHF76599.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
SCNpilot_cont_500_bf_scaffold_235_17
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21635..23296
DNA (1662bp) protein (554aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037DAA3D
Putative 5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:AHF76598.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
SCNpilot_cont_500_bf_scaffold_235_18
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23366..24160
DNA (795bp) protein (265aa)
Probable GntR-family transcriptional regulator n=2 Tax=Bordetella bronchiseptica RepID=K4T4Y5_BORBO
GntR family transcriptional regulator {ECO:0000313|EMBL:AHF76597.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_235_19
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24355..25263
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Azospirillum amazonense Y2 RepID=G1XZQ5_9PROT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGY01256.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_235_20
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25405..29331
DNA (3927bp) protein (1309aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B51F67 rbh
hypothetical protein rbh
Blr5538 protein {ECO:0000313|EMBL:BAC50803.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_500_bf_scaffold_235_21
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29353..29745
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034BB0C1
Uncharacterized protein {ECO:0000313|EMBL:CCE08830.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_235_22
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29862..30386
DNA (525bp) protein (175aa)
cysteine desulfurase (EC:2.8.1.7)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0003184F12
Aminotransferase {ECO:0000313|EMBL:ESZ27186.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_cont_500_bf_scaffold_235_23
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30482..31267)
DNA (786bp) protein (262aa)
IclR family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4C120
IclR family transcriptional regulator {ECO:0000313|EMBL:KGD90554.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
Transcriptional regulator, IclR family
SCNpilot_cont_500_bf_scaffold_235_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31404..35279
DNA (3876bp) protein (1292aa)
hydantoinase/oxoprolinase; K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
N-methylhydantoinase A/acetone carboxylase, beta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z3H7_9RHIZ
N-methylhydantoinase A/acetone carboxylase, beta subunit {ECO:0000313|EMBL:EIM30769.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_500_bf_scaffold_235_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35313..36908
DNA (1596bp) protein (532aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2K8Q2_9RHIZ
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EUB97677.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
dppAch2; ABC transporter, substrate-binding protein (Dipeptide)
SCNpilot_cont_500_bf_scaffold_235_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

36935..37945
DNA (1011bp) protein (337aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2SVI6_9RHIZ
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_500_bf_scaffold_235_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

37949..38869
DNA (921bp) protein (307aa)
cytochrome C550 n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002375A72
oligopeptide ABC transporter permease protein; K02034 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_cont_500_bf_scaffold_235_28
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38866..39888
DNA (1023bp) protein (341aa)
Predicted S-transferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2V0_9PROT
Predicted S-transferase {ECO:0000313|EMBL:EDP61564.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_235_29
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39881..40702
DNA (822bp) protein (274aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF080 RepID=J2JP43_9RHIZ
Peptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDN55773.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
appF; oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_235_30
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40828..42087
DNA (1260bp) protein (420aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002EF9E15 rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:AEC20902.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
Displaying items 1-30 of 335 in total

View Taxonomy