ggKbase home page

SCNpilot_cont_500_bf_scaffold_870

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_870_trna_1
unknown

Not on your lists

4..76
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_870_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15..1604)
DNA (1590bp) protein (530aa)
Resolvase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUN8_NITWN rbh
resolvase rbh
Resolvase {ECO:0000313|EMBL:ABA04003.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_870_2
unknown

Not on your lists

comp(1727..2035)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_870_3
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2053..3774)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1B7_9BRAD rbh
conserved membrane hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM86918.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_870_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3780..4298)
DNA (519bp) protein (173aa)
Thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J0Q5_POLGS
Thioesterase superfamily protein {ECO:0000313|EMBL:ADZ70741.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_870_5

Not on your lists

comp(4303..4623)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630C8F
Uncharacterized protein {ECO:0000313|EMBL:AGC71245.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_870_6

Not on your lists

comp(4640..5971)
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630481 rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AGC71246.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_870_7

Not on your lists

comp(5968..6969)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CCDD0
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AGC71247.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
P-type conjugative transfer protein TrbG
SCNpilot_cont_500_bf_scaffold_870_8

Not on your lists

comp(6966..7664)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380D457
Conjugative transfer protein TrbF {ECO:0000313|EMBL:AGC71248.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
Conjugal transfer protein; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_870_9

Not on your lists

comp(7678..8967)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037507D5 rbh
Conjugative transfer protein TrbL {ECO:0000313|EMBL:AGC71249.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_870_10

Not on your lists

comp(9318..12638)
DNA (3321bp) protein (1107aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630B48 rbh
Conjugative transfer protein TrbE {ECO:0000313|EMBL:AGC71252.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
Conjugal transfer protein; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_870_11

Not on your lists

comp(12632..12904)
DNA (273bp) protein (91aa)
Conjugative transfer protein TrbD n=1 Tax=uncultured bacterium A1Q1_fos_75 RepID=L7VW30_9BACT
Conjugative transfer protein TrbD {ECO:0000313|EMBL:AGC71253.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
Conjugative transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_870_12

Not on your lists

comp(12927..13265)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003746491
Conjugative transfer protein TrbC {ECO:0000313|EMBL:AGC71254.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_870_13

Not on your lists

comp(13283..14272)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037F07B7 rbh
Conjugative transfer protein TrbB {ECO:0000313|EMBL:AGC71255.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein traB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_870_14

Not on your lists

comp(14265..14810)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000366E218
Uncharacterized protein {ECO:0000313|EMBL:AGC71256.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
CopG family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_870_15
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..16801)
DNA (1992bp) protein (664aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003718018 rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:GAK33913.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
traG; Conjugal transfer protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_870_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17160..18086)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9A0N0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW09325.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Gene 61 protein
SCNpilot_cont_500_bf_scaffold_870_17
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19292..20239
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZDH9_METPB rbh
Uncharacterized protein {ECO:0000313|EMBL:AJE46981.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_870_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20236..21294)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378D8DD rbh
DNA primase {ECO:0000313|EMBL:ETI60083.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_870_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21314..21511)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4X0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53000.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_870_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21578..23578)
DNA (2001bp) protein (667aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378DE6D rbh
Putative plasmid stabilization protein {ECO:0000313|EMBL:EJW11002.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ParB domain-containing protein nuclease
SCNpilot_cont_500_bf_scaffold_870_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23669..24046)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368DC2B
Single-stranded DNA endonuclease {ECO:0000313|EMBL:KIZ44514.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_870_22
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24043..24993)
DNA (951bp) protein (317aa)
Antirestriction protein; ArdC n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQR5_NITWN
antirestriction protein; ArdC
Antirestriction protein ArdC {ECO:0000313|EMBL:ABA05376.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_870_23
RifOxyB12_full_OP3_50_7_curated, Omnitrophica, Bacteria

Not on your lists

25603..27630
DNA (2028bp) protein (676aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QW24_9BURK
hypothetical protein
Tax=RifOxyB12_full_OP3_50_7_curated
SCNpilot_cont_500_bf_scaffold_870_24
unknown

Not on your lists

comp(27724..28923)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI0003792A31 rbh
SCNpilot_cont_500_bf_scaffold_870_25
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28923..29774)
DNA (852bp) protein (284aa)
serine/threonine protein kinase (EC:2.7.1.-); K00924 [EC:2.7.1.-]
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI000381BEE9
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:EMB18847.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
SCNpilot_cont_500_bf_scaffold_870_26
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

comp(29728..30345)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI000363760D
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
SCNpilot_cont_500_bf_scaffold_870_27
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30826..31650
DNA (825bp) protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC34317.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Displaying 28 items

View Taxonomy