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SCNpilot_cont_500_bf_scaffold_22022

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_22022_1
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(3..749)
DNA (747bp) protein (249aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71305.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_cont_500_bf_scaffold_22022_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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898..1305
DNA (408bp) protein (136aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Coproporphyrinogen-III oxidase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7M2_STAND
SCNpilot_cont_500_bf_scaffold_22022_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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1360..2541
DNA (1182bp) protein (394aa)
dapE; acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase-like deacylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003821C4F
SCNpilot_cont_500_bf_scaffold_22022_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2555..3139
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003681803
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72066.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_22022_5
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3092..3811)
DNA (720bp) protein (240aa)
truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A {ECO:0000255|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000255|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000255|HAMAP-Rule:MF_00171}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369B596
SCNpilot_cont_500_bf_scaffold_22022_6
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3811..4743)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
SCNpilot_cont_500_bf_scaffold_22022_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4747..5226)
DNA (480bp) protein (160aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003617F34
SCNpilot_cont_500_bf_scaffold_22022_8
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5306..6280
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037EBEEC
hypothetical protein; K09760 DNA recombination protein RmuC
Uncharacterized protein {ECO:0000313|EMBL:EFM55349.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
Displaying 8 items

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