ggKbase home page

SCNpilot_cont_500_bf_scaffold_277

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_277_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..211)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00037BF91F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27458.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_277_2
unknown

Not on your lists

312..533
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_277_3
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

541..873
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J8P7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ08695.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
SCNpilot_cont_500_bf_scaffold_277_4
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(952..1680)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BBT4_STRRD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACZ86153.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_cont_500_bf_scaffold_277_5
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1807..2238
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MS31_9ACTO
putative signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ADB73538.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_500_bf_scaffold_277_6
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2363..2722
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HCE3_ACTM4
Phosphoribosylglycinamide formyltransferase {ECO:0000313|EMBL:KHD74676.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_277_7
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2744..3148)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKP6_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV80703.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_500_bf_scaffold_277_8
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3145..4041)
DNA (897bp) protein (299aa)
Mycothiol S-conjugate amidase {ECO:0000256|HAMAP-Rule:MF_01482}; EC=3.5.1.115 {ECO:0000256|HAMAP-Rule:MF_01482};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Mycothiol S-conjugate amidase Mca n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKP7_NAKMY rbh
mycothiol conjugate amidase Mca rbh
SCNpilot_cont_500_bf_scaffold_277_9
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4374..4862
DNA (489bp) protein (163aa)
Transcription elongation factor GreA n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKP8_NAKMY
transcription elongation factor GreA; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_500_bf_scaffold_277_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5000..6211)
DNA (1212bp) protein (404aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Threonine dehydratase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKP9_NAKMY rbh
Threonine dehydratase {ECO:0000313|EMBL:ACV80706.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_500_bf_scaffold_277_11
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6345..8735)
DNA (2391bp) protein (797aa)
DNA-binding protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6D490 rbh
tRNA/helicase-type nucleic acid binding protein rbh
Amino acid/polyamine/organocation transporter, APC superfamily {ECO:0000313|EMBL:ABK52966.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
SCNpilot_cont_500_bf_scaffold_277_12
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8778..9818)
DNA (1041bp) protein (347aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2]
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003620EF7
ROK family transcriptional regulator {ECO:0000313|EMBL:AKH81140.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
SCNpilot_cont_500_bf_scaffold_277_13
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9829..10980)
DNA (1152bp) protein (384aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48]
Cystathionine gamma-synthase {ECO:0000313|EMBL:ACV80707.1}; EC=2.5.1.48 {ECO:0000313|EMBL:ACV80707.1};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Cystathionine gamma-synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKQ0_NAKMY
SCNpilot_cont_500_bf_scaffold_277_14
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11055..12158
DNA (1104bp) protein (368aa)
NAD/mycothiol-dependent formaldehyde dehydrogenase; K00153 S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
NAD/mycothiol-dependent formaldehyde dehydrogenase {ECO:0000313|EMBL:BAK33315.1}; EC=1.1.1.306 {ECO:0000313|EMBL:BAK33315.1};; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
alcohol dehydrogenase n=1 Tax=Actinomadura atramentaria RepID=UPI00035CDA8F
SCNpilot_cont_500_bf_scaffold_277_15
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12354..13277
DNA (924bp) protein (308aa)
Lipolytic protein G-D-S-L family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKQ3_NAKMY
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ACV80710.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_500_bf_scaffold_277_16
unknown

Not on your lists

comp(13324..13665)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_277_17
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13719..14501)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKQ4_NAKMY rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACV80711.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_500_bf_scaffold_277_18
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15042..16265
DNA (1224bp) protein (408aa)
transporter n=1 Tax=Nocardioides sp. Iso805N RepID=UPI000361D7ED rbh
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
magnesium and cobalt transport protein CorA; K03284 magnesium transporter rbh
SCNpilot_cont_500_bf_scaffold_277_19
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16353..16709)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GIY7_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB03562.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
scp-like extracellular protein
SCNpilot_cont_500_bf_scaffold_277_20
Brevibacterium linens, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17195..18652)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Rhodococcus ruber RepID=UPI00034966A3 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KHS53114.1}; TaxID=1703 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium linens.;"
major facilitator superfamily protein rbh
SCNpilot_cont_500_bf_scaffold_277_21
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18800..19903
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036F05DC
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:EIC08378.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
glycoside hydrolase family protein
SCNpilot_cont_500_bf_scaffold_277_22
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19930..22155)
DNA (2226bp) protein (742aa)
Putative diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WCA5_9ACTO
putative diguanylate cyclase/phosphodiesterase with GAF sensor
Tax=RBG_16_RIF_CHLX_72_14_curated
SCNpilot_cont_500_bf_scaffold_277_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22492..22953)
DNA (462bp) protein (154aa)
hypothetical protein id=5081553 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_cont_500_bf_scaffold_277_24
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22950..23912)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003812AFE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEF41183.1}; TaxID=443218 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
SCNpilot_cont_500_bf_scaffold_277_25
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23942..24292)
DNA (351bp) protein (117aa)
ArsR family transcriptional regulator n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00037DE879
putative ArsR family transcriptional regulator
Putative ArsR-family transcriptional regulator {ECO:0000313|EMBL:AEF41182.1}; TaxID=443218 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
SCNpilot_cont_500_bf_scaffold_277_26
unknown

Not on your lists

24552..24887
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_277_27
Knoellia aerolata, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25492..26979
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E4M0_9MICO rbh
HNH endonuclease {ECO:0000313|EMBL:KGN40325.1}; TaxID=1385519 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia aerolata DSM 18566.;"
HNH endonuclease
SCNpilot_cont_500_bf_scaffold_277_28
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27449..27754
DNA (306bp) protein (102aa)
UPI0003C7E3B8 related cluster n=1 Tax=unknown RepID=UPI0003C7E3B8
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
Na+/H+ antiporter {ECO:0000313|EMBL:ADB32803.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_cont_500_bf_scaffold_277_29
Streptomyces peucetius, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27779..28999
DNA (1221bp) protein (407aa)
Putative ferredoxin reductase n=1 Tax=Streptomyces peucetius ATCC 27952 RepID=B3VA44_STRPE
Putative ferredoxin reductase {ECO:0000313|EMBL:ACE73832.1}; TaxID=316280 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces peucetius ATCC 27952.;"
ferredoxin reductase
SCNpilot_cont_500_bf_scaffold_277_30
unknown

Not on your lists

29315..29593
DNA (279bp) protein (93aa)

This feature has no annotations

Displaying items 1-30 of 95 in total

View Taxonomy