ggKbase home page

SCNpilot_cont_500_bf_scaffold_7252_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7252_curated_1
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..614
DNA (612bp) protein (204aa)
idhA; inositol 2-dehydrogenase IdhA (EC:1.1.1.18)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A7252
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:EIM77426.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_cont_500_bf_scaffold_7252_curated_2
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

735..1880
DNA (1146bp) protein (382aa)
ABC transporter substrate binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1G0_AGRVS
ABC transporter substrate-binding protein; K05777 putative thiamine transport system substrate-binding protein
ABC transporter substrate binding protein {ECO:0000313|EMBL:ACM38708.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_7252_curated_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1892..2755
DNA (864bp) protein (288aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Rhizobium sp. CF122 RepID=J3BKU5_9RHIZ
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFL32218.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative permease component of ABC transporter
SCNpilot_cont_500_bf_scaffold_7252_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2752..3582
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI00035CACEA
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJC63426.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
putative transmembrane permease component of ABC transporter; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_500_bf_scaffold_7252_curated_5
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3609..4682
DNA (1074bp) protein (358aa)
afuC; ABC transporter nucleotide binding/ATPase protein (EC:3.6.3.31)
ABC transporter related protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5G7_KETVY
ABC transporter related protein {ECO:0000313|EMBL:ADO44211.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_cont_500_bf_scaffold_7252_curated_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4675..5547
DNA (873bp) protein (291aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QDG2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM33537.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
glycerophosphoryl diester phosphodiesterase
SCNpilot_cont_500_bf_scaffold_7252_curated_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5517..6332)
DNA (816bp) protein (272aa)
suhB; extragenic suppressor protein SuhB; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Extragenic suppressor protein SuhB n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1F5_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KGM30230.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_7252_curated_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6408..6842)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362DC2C
hmrR2; Putative transcriptional regulator,merR family protein
Putative transcriptional regulator,merR family protein {ECO:0000313|EMBL:AGG72029.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_cont_500_bf_scaffold_7252_curated_9
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6839..9145)
DNA (2307bp) protein (769aa)
Lead, cadmium, zinc and mercury transporting ATPase, Copper-translocating P-type ATPase {ECO:0000313|EMBL:EPX85450.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EPX85450.1};; EC=3.6.3.4 {ECO:0000313|EMBL:EPX85450.1};; EC=3.6.3.5 {ECO:0000313|EMBL:EPX85450.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
PREDICTED: copper-transporting ATPase RAN1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C197CA
SCNpilot_cont_500_bf_scaffold_7252_curated_10
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9315..9512
DNA (198bp) protein (66aa)
Heavy metal-associated domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XDU5_9BURK
Heavy metal-associated domain protein {ECO:0000313|EMBL:EFF75029.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
heavy-metal-associated domain-containing protein; K07213 copper chaperone
SCNpilot_cont_500_bf_scaffold_7252_curated_11
unknown

Not on your lists

9584..9802
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377BFD1
SCNpilot_cont_500_bf_scaffold_7252_curated_12
unknown

Not on your lists

comp(9962..10174)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_7252_curated_13
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10240..11748)
DNA (1509bp) protein (503aa)
carbohydrate kinase; K00854 xylulokinase [EC:2.7.1.17]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F1578
Carbohydrate kinase, fggy {ECO:0000313|EMBL:EEX16144.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
SCNpilot_cont_500_bf_scaffold_7252_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11753..12106)
DNA (354bp) protein (118aa)
TIM-barrel enzyme n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JM77_AGRRK
TIM-barrel enzyme; K06971
TIM-barrel enzyme {ECO:0000313|EMBL:ACM30828.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Displaying 14 items

View Taxonomy