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SCNpilot_cont_500_bf_scaffold_4816_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4816_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..600
DNA (600bp) protein (200aa)
Membrane protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGH5_9RHOB
ABC transporter permease yurN {ECO:0000313|EMBL:EYR77902.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_4816_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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597..1484
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGI1_9RHOB
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77903.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative amino acid ABC transporter, permease protein
SCNpilot_cont_500_bf_scaffold_4816_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1510..2532
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI000380364C
Threonine dehydrogenase {ECO:0000313|EMBL:EYR77904.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc-type alcohol dehydrogenase-like protein
SCNpilot_cont_500_bf_scaffold_4816_curated_4
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(2602..3456)
DNA (855bp) protein (285aa)
ABC transporter permease n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RFH4_9FIRM
ABC transporter permease {ECO:0000313|EMBL:CDC44044.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_4816_curated_5
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3461..4393)
DNA (933bp) protein (311aa)
Permease component of ABC-type sugar transporter n=1 Tax=Clostridium pasteurianum BC1 RepID=R4JYR0_CLOPA
Trehalose transport system permease protein SugA {ECO:0000313|EMBL:KJF16828.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
permease component of ABC-type sugar transporter
SCNpilot_cont_500_bf_scaffold_4816_curated_6
unknown

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comp(4467..4697)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4816_curated_7
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5793..6935)
DNA (1143bp) protein (381aa)
Oxidoreductase domain-containing protein n=1 Tax=Paenibacillus mucilaginosus 3016 RepID=H6NCM5_9BACL
oxidoreductase domain-containing protein
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:AFC28954.1}; TaxID=1116391 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus 3016.;"
SCNpilot_cont_500_bf_scaffold_4816_curated_8
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7916..9091
DNA (1176bp) protein (392aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Saccharomonospora saliphila RepID=UPI00036D119E
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EJY56740.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hesperidum URH17-3-68.;"
sugar ABC transporter periplasmic protein
SCNpilot_cont_500_bf_scaffold_4816_curated_9
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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9108..10064
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI0003773A77
ABC transporter permease {ECO:0000313|EMBL:KIH97709.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_4816_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10061..10144
DNA (84bp) protein (28aa)
molybdopterin-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E968C
Sulfite oxidase-like oxidoreductase {ECO:0000313|EMBL:EJJ28621.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
oxidoreductase molybdopterin binding protein; K07147
Displaying 10 items

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