ggKbase home page

SCNpilot_cont_500_bf_scaffold_12759_curated

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12759_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..595
DNA (594bp) protein (198aa)
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ54_9RHIZ
HTH-type transcriptional repressor CytR {ECO:0000313|EMBL:EYR77885.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LacI family
SCNpilot_cont_500_bf_scaffold_12759_curated_2
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

774..1736
DNA (963bp) protein (321aa)
UPI0003CE2D80 related cluster n=1 Tax=unknown RepID=UPI0003CE2D80
LacI family transcriptional regulator {ECO:0000313|EMBL:ESX78090.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_12759_curated_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1795..3321
DNA (1527bp) protein (509aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES68_9RHIZ
D-ribose transporter ATP-binding protein {ECO:0000313|EMBL:KKC31734.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_cont_500_bf_scaffold_12759_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3318..4343
DNA (1026bp) protein (342aa)
UPI0003CF12A6 related cluster n=1 Tax=unknown RepID=UPI0003CF12A6
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR77888.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase; K10440 ribose transport system permease protein
SCNpilot_cont_500_bf_scaffold_12759_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4395..5750
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ87_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77889.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12759_curated_6
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6636..6923
DNA (288bp) protein (96aa)
pgm; phosphoglucomutase (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2]
Phosphomannomutase/phosphoglucomutase {ECO:0000313|EMBL:CAL75800.1}; EC=5.4.2.2 {ECO:0000313|EMBL:CAL75800.1};; EC=5.4.2.8 {ECO:0000313|EMBL:CAL75800.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371FF10
Displaying 6 items

View Taxonomy