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SCNpilot_cont_500_bf_scaffold_12268_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12268_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..421)
DNA (420bp) protein (140aa)
manganese transporter n=1 Tax=Kaistia granuli RepID=UPI000369DD97
manganese transporter MntH; K03322 manganese transport protein
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_12268_curated_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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891..1208
DNA (318bp) protein (106aa)
Transcriptional regulator, ArsR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEP0_METS4
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGM33722.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ArsR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_12268_curated_3
unknown

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1201..1710
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12268_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1749..2351
DNA (603bp) protein (201aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
endopeptidase Clp (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
UPI0003CFD987 related cluster n=1 Tax=unknown RepID=UPI0003CFD987
SCNpilot_cont_500_bf_scaffold_12268_curated_5
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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2414..3355
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C7012
Oxidoreductase protein
Oxidoreductase protein {ECO:0000313|EMBL:AFD26782.1}; TaxID=745776 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 /; I-0).;"
SCNpilot_cont_500_bf_scaffold_12268_curated_6
unknown

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comp(3374..3799)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037F06D6
SCNpilot_cont_500_bf_scaffold_12268_curated_7
unknown

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comp(3875..4039)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12268_curated_8
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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4068..5183
DNA (1116bp) protein (372aa)
asd; aspartate-B-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
aspartate-semialdehyde dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00037E3DB0
SCNpilot_cont_500_bf_scaffold_12268_curated_9
unknown

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comp(5208..5297)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12268_curated_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5318..5755)
DNA (438bp) protein (146aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C2109
SCNpilot_cont_500_bf_scaffold_12268_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6137..6949
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363052A
Uncharacterized protein {ECO:0000313|EMBL:AHF84448.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12268_curated_12
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6960..7454)
DNA (495bp) protein (165aa)
OsmC family protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RQI5_ASTEC
osmc family protein; K07397 putative redox protein
OsmC family protein {ECO:0000313|EMBL:ADU12169.1}; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
SCNpilot_cont_500_bf_scaffold_12268_curated_13
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7510..8790)
DNA (1281bp) protein (427aa)
hypothetical protein, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037DB9C0
Autotransporter {ECO:0000313|EMBL:ESZ68131.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
adhesin
SCNpilot_cont_500_bf_scaffold_12268_curated_14
Arabidopsis thaliana, Arabidopsis, Brassicales, rosids, Streptophyta, Viridiplantae

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9006..10163
DNA (1158bp) protein (386aa)
Genomic DNA, chromosome 3, P1 clone:MKA23 n=1 Tax=Arabidopsis thaliana RepID=Q9LIE8_ARATH
bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein
Genomic DNA, chromosome 3, P1 clone:MKA23 {ECO:0000313|EMBL:BAB03062.1}; Protease inhibitor/seed storage/LTP family protein {ECO:0000313|EMBL:AEE76593.1}; TaxID=3702 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.;" source="Arabidopsis thaliana (Mouse-ear cress).;"
SCNpilot_cont_500_bf_scaffold_12268_curated_15
Chlamydomonas incerta, Chlamydomonas, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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10173..11495
DNA (1323bp) protein (441aa)
PREDICTED: calphotin-like n=1 Tax=Danio rerio RepID=UPI0003837F63
uncharacterized LOC100215998
Plus agglutinin {ECO:0000313|EMBL:AAX33674.1}; Flags: Fragment;; TaxID=51695 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.;" source="Chlamydomonas incerta.;"
SCNpilot_cont_500_bf_scaffold_12268_curated_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11525..12316)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003789B5B
Short-chain dehydrogenase {ECO:0000313|EMBL:ESW87643.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_12268_curated_17
unknown

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comp(12337..12510)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 17 items

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