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SCNpilot_cont_500_bf_scaffold_14480_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_14480_curated_1
bacterium YEK0313, Bacteria

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3..572
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030E3EB4
Amidohydrolase {ECO:0000313|EMBL:CEJ10966.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TIM-barrel fold metal-dependent hydrolase
SCNpilot_cont_500_bf_scaffold_14480_curated_2
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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641..1906
DNA (1266bp) protein (422aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; K01438 acetylornithine deacetylase [EC:3.5.1.16]
Acetylornithine deacetylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HNB0_9PROT
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:EYD76205.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
SCNpilot_cont_500_bf_scaffold_14480_curated_3
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1903..2658
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI00035E0176
UxuR uxu operon transcriptional regulator {ECO:0000313|EMBL:EYD76206.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_14480_curated_4
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2655..3614
DNA (960bp) protein (320aa)
Dipeptide transport system permease protein DppB n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K7J4_9RHOB
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:EYD76207.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_14480_curated_5
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3884..4465
DNA (582bp) protein (194aa)
Binding-protein-dependent transport systems inner membrane component n=7 Tax=Geobacillus RepID=D7D379_GEOSC
Dipeptide transport system permease protein DppC {ECO:0000313|EMBL:EYD76208.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
dipeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_14480_curated_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4462..5328
DNA (867bp) protein (289aa)
ABC transporter related protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X4S9_ACISM
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:EYD76209.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
ABC transporter; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_14480_curated_7
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5321..6121
DNA (801bp) protein (267aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Geobacter sp. (strain M18) RepID=E8WME7_GEOS8
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:EYD76210.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_14480_curated_8
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6493..6897
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Baudoinia compniacensis (strain UAMH 10762) RepID=M2N3H4_BAUCO
Uncharacterized protein {ECO:0000313|EMBL:EYD76211.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_500_bf_scaffold_14480_curated_9
unknown

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7235..7933
DNA (699bp) protein (233aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_14480_curated_10
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8070..8486
DNA (417bp) protein (139aa)
dipeptide ABC transporter, periplasmic component n=1 Tax=Sporolactobacillus inulinus RepID=UPI000255C4EE
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EYD76212.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_14480_curated_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8863..10221
DNA (1359bp) protein (453aa)
Site-specific recombinase XerD n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMP5_9RHIZ
Site-specific recombinase XerD {ECO:0000313|EMBL:EIM25237.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_14480_curated_12
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10398..11186)
DNA (789bp) protein (263aa)
UPI0003D05C4D related cluster n=1 Tax=unknown RepID=UPI0003D05C4D
Uncharacterized protein {ECO:0000313|EMBL:ESZ68180.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
SCNpilot_cont_500_bf_scaffold_14480_curated_13
unknown

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11303..11395
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_14480_curated_14
unknown

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11413..11784
DNA (372bp) protein (124aa)

This feature has no annotations

Displaying 14 items

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