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SCNpilot_cont_500_bf_scaffold_2015_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2015_curated_1
unknown

Not on your lists

comp(3..86)
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2015_curated_2
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

374..793
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JQK9_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50829.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_cont_500_bf_scaffold_2015_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(805..1671)
DNA (867bp) protein (289aa)
Nitrate reductase 1, beta (Fe-S) subunit {ECO:0000313|EMBL:CDX53658.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDX53658.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
nitrate reductase subunit beta protein; K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
Nitrate reductase beta subunit protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HWU0_AZOC5
SCNpilot_cont_500_bf_scaffold_2015_curated_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2233..5976)
DNA (3744bp) protein (1248aa)
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:CCB66461.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CCB66461.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
narG; nitrate reductase subunit alpha (EC:1.7.99.4); K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
Nitrate reductase, alpha subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCT8_HYPSM
SCNpilot_cont_500_bf_scaffold_2015_curated_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..8746)
DNA (2742bp) protein (914aa)
Nitrite extrusion protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HWT4_AZOC5
Nitrite extrusion protein {ECO:0000313|EMBL:BAF87422.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
nitrite extrusion protein; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
SCNpilot_cont_500_bf_scaffold_2015_curated_6
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9123..9539
DNA (417bp) protein (139aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUP8_METNO
Crp/Fnr family transcriptional regulator; K13642 CRP/FNR family transcriptional regulator, transcriptional activator FtrB
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACL57116.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_2015_curated_7
unknown

Not on your lists

comp(9812..10030)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2015_curated_8
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10250..10654)
DNA (405bp) protein (135aa)
UPI0003CF27C9 related cluster n=1 Tax=unknown RepID=UPI0003CF27C9
Uncharacterized protein {ECO:0000313|EMBL:ESY82203.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2015_curated_9
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11256..12776
DNA (1521bp) protein (507aa)
type I site-specific DNA-methyltransferase HsdM-like protein (EC:2.1.1.72)
Type I restriction system adenine methylase HsdM n=1 Tax=Rhizobium sp. CF122 RepID=J3BMU7_9RHIZ
Type I restriction system adenine methylase HsdM {ECO:0000313|EMBL:EJL53919.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_cont_500_bf_scaffold_2015_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12766..14028
DNA (1263bp) protein (421aa)
Type I restriction-modification system subunit HsdS-like protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S8W2_RHIET
type I restriction-modification system subunit HsdS-like protein
Type I restriction-modification system subunit HsdS-like protein {ECO:0000313|EMBL:AGS23871.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_2015_curated_11
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14036..17014
DNA (2979bp) protein (993aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EDQ31786.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EDQ31786.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
type I site-specific deoxyribonuclease HsdR-like protein (EC:3.1.21.3)
Type I restriction-modification system, R subunit n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DFK8_9RHIZ
SCNpilot_cont_500_bf_scaffold_2015_curated_12
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17079..17693
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E03FA9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ32064.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_500_bf_scaffold_2015_curated_13
unknown

Not on your lists

comp(17532..17864)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2015_curated_14
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18198..19358
DNA (1161bp) protein (387aa)
Formate dehydrogenase {ECO:0000313|EMBL:EUC12001.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EUC12001.1};; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
formate dehydrogenase; K00122 formate dehydrogenase [EC:1.2.1.2]
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Burkholderia sp. BT03 RepID=J3BML8_9BURK
SCNpilot_cont_500_bf_scaffold_2015_curated_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19510..19611
DNA (102bp) protein (34aa)
Transposase IS3/IS911 family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPW6_XANP2
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS70062.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_2015_curated_16
unknown

Not on your lists

19618..19749
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2015_curated_17
unknown

Not on your lists

19959..20060
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2015_curated_18
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20473..21459
DNA (987bp) protein (329aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IT83_9BURK
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EIF33935.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2015_curated_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21555..22496
DNA (942bp) protein (314aa)
PAS/PAC sensor hybrid histidine kinase; K00936 [EC:2.7.3.-]
UPI0003CF66E2 related cluster n=1 Tax=unknown RepID=UPI0003CF66E2
Blue-light-activated protein {ECO:0000313|EMBL:CEL29446.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
SCNpilot_cont_500_bf_scaffold_2015_curated_20
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23579..24031)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2K3_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI96835.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_500_bf_scaffold_2015_curated_21
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24031..24927)
DNA (897bp) protein (299aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPV4_9SPHN
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQA99588.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
virD4; type IV secretory pathway VirD4 component; K03205 type IV secretion system protein VirD4
Displaying 21 items

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