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SCNpilot_cont_500_bf_scaffold_12350_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12350_curated_1
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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86..394
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Kaistia granuli RepID=UPI0003816014
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
SCNpilot_cont_500_bf_scaffold_12350_curated_2
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(384..842)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8K5_RHIRD
Strain SA-120 Contig455, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01346.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
SCNpilot_cont_500_bf_scaffold_12350_curated_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1580..1873
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Kaistia granuli RepID=UPI000367215F
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_4
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1812..2627)
DNA (816bp) protein (272aa)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BUN0_9RHIZ
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:EIM73282.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
NAD(FAD)-dependent dehydrogenase
SCNpilot_cont_500_bf_scaffold_12350_curated_5
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2938..3318
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=Kaistia granuli RepID=UPI0003665EC9
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_cont_500_bf_scaffold_12350_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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3318..4031
DNA (714bp) protein (238aa)
30S ribosomal protein S3 n=1 Tax=Kaistia granuli RepID=UPI000381CF2A
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4063..4476
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Kaistia granuli RepID=UPI00037397E5
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_cont_500_bf_scaffold_12350_curated_8
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4503..4703
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Kaistia granuli RepID=UPI0003825ADD
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000255|HAMAP-Rule:MF_00374}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_9
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4714..4962
DNA (249bp) protein (83aa)
30S ribosomal protein S17 n=1 Tax=Amorphus coralli RepID=UPI00037197B9
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_cont_500_bf_scaffold_12350_curated_10
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5035..5403
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Kaistia granuli RepID=UPI00036CBF49
ribosomal protein L14, bacterial/organelle
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_cont_500_bf_scaffold_12350_curated_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5403..5720
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Kaistia granuli RepID=UPI000381D18A
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_500_bf_scaffold_12350_curated_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5713..6270
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Kaistia granuli RepID=UPI000372BCDA
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
50S ribosomal protein L5 {ECO:0000255|HAMAP-Rule:MF_01333}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6296..6601
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Kaistia granuli RepID=UPI00037C94ED
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537, ECO:0000313|EMBL:CCJ06717.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_14
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6615..7013
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Kaistia granuli RepID=UPI00036DACB2
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_500_bf_scaffold_12350_curated_15

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7054..7587
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Kaistia granuli RepID=UPI000377D525
Uncharacterized protein {ECO:0000313|EMBL:KKN73253.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_cont_500_bf_scaffold_12350_curated_16
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7600..7956
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Kaistia granuli RepID=UPI00037C2F75
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_500_bf_scaffold_12350_curated_17
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8007..8291
DNA (285bp) protein (95aa)
30S ribosomal protein S5 n=1 Tax=Kaistia granuli RepID=UPI0003618FE9
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
Displaying 17 items

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