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SCNpilot_cont_500_bf_scaffold_8847_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8847_curated_1
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..332
DNA (330bp) protein (110aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KDK7_MESAW
phospho-2-dehydro-3-deoxyheptonate aldolase
SCNpilot_cont_500_bf_scaffold_8847_curated_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1372..1605
DNA (234bp) protein (78aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
tyrS; tyrosine-tRNA ligase TyrS (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003820530
SCNpilot_cont_500_bf_scaffold_8847_curated_3
unknown

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2188..2421
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_4
unknown

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2743..3339
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_5
unknown

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3349..3705
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_6
unknown

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3781..4143
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_7
unknown

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4333..4611
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5060..5524
DNA (465bp) protein (155aa)
bcp; bacterioferritin comigratory protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Peroxiredoxin n=1 Tax=Rhizobium sp. CF080 RepID=J2KDR8_9RHIZ
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EUB95658.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_cont_500_bf_scaffold_8847_curated_9
unknown

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comp(5401..6009)
DNA (609bp) protein (203aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_10
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6451..7764
DNA (1314bp) protein (438aa)
Membrane protein associated metalloendopeptidase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JEG6_9RHIZ
Membrane protein {ECO:0000313|EMBL:KEQ05971.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
metalloendopeptidase rbh
SCNpilot_cont_500_bf_scaffold_8847_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7950..9329
DNA (1380bp) protein (460aa)
Metalloendopeptidase-like protein n=2 Tax=Bradyrhizobiaceae RepID=F7QN15_9BRAD
Metalloendopeptidase-like protein {ECO:0000313|EMBL:EGP07434.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
peptidase M23B
SCNpilot_cont_500_bf_scaffold_8847_curated_12
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9377..10342)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F0E77
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
prfB; Peptide chain release factor 2 (RF-2)
SCNpilot_cont_500_bf_scaffold_8847_curated_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10972..11208
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381D0DE
Uncharacterized protein {ECO:0000313|EMBL:KGM31843.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8847_curated_14
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11236..12219)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B6E14
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
Mg++ transporter
SCNpilot_cont_500_bf_scaffold_8847_curated_15
unknown

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12433..12645
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8847_curated_16
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12832..13269)
DNA (438bp) protein (146aa)
transporter n=1 Tax=Kaistia granuli RepID=UPI00038064EB
Putative uncharacterized protein {ECO:0000313|EMBL:EHP94554.1}; Flags: Precursor;; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
hypothetical protein; K08978 putative membrane protein
SCNpilot_cont_500_bf_scaffold_8847_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13283..13750)
DNA (468bp) protein (156aa)
glycosyl transferase family protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036ECA53
Penicillin-binding protein {ECO:0000313|EMBL:KIZ38826.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Displaying 17 items

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