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SCNpilot_cont_500_bf_scaffold_5984_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5984_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..218)
DNA (216bp) protein (72aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A881_STAND
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ADH88554.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(647..1267)
DNA (621bp) protein (207aa)
DSBA oxidoreductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A882_STAND
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:ADH88555.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1306..3153)
DNA (1848bp) protein (616aa)
protein-disulfide reductase (EC:1.8.1.8); K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8]
Protein-disulfide reductase {ECO:0000313|EMBL:ADH88556.1}; EC=1.8.1.8 {ECO:0000313|EMBL:ADH88556.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Protein-disulfide reductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A883_STAND
SCNpilot_cont_500_bf_scaffold_5984_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3706..3930
DNA (225bp) protein (75aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A884_STAND
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADH88557.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3930..5270
DNA (1341bp) protein (447aa)
integral membrane sensor signal transduction histidine kinase; K07645 two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A885_STAND
SCNpilot_cont_500_bf_scaffold_5984_curated_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5427..5834
DNA (408bp) protein (136aa)
Putative fluoride ion transporter CrcB n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I174_AZOC5
crcB; CrcB-like protein; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_7
unknown

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comp(5748..6404)
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6731..7045)
DNA (315bp) protein (105aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Sensor protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I181_AZOC5
sensor protein
SCNpilot_cont_500_bf_scaffold_5984_curated_9
unknown

Not on your lists

7617..7799
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_10
unknown

Not on your lists

7898..9064
DNA (1167bp) protein (389aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_11
unknown

Not on your lists

9089..9586
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_12
unknown

Not on your lists

9809..10651
DNA (843bp) protein (281aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_13
unknown

Not on your lists

10748..11209
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11955..12899
DNA (945bp) protein (315aa)
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I184_AZOC5
araC; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAF87343.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12996..13838)
DNA (843bp) protein (281aa)
Alpha/beta hydrolase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I187_AZOC5
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:BAF87344.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15423..15608)
DNA (186bp) protein (62aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Two-component hybrid sensor and regulator n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DRG6_BRAJP
two-component hybrid sensor and regulator
SCNpilot_cont_500_bf_scaffold_5984_curated_17
unknown

Not on your lists

15924..16310
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_18
unknown

Not on your lists

16739..17092
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5984_curated_19
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18124..19038
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F145E
AraC family transcriptional regulator {ECO:0000313|EMBL:KDR38971.1}; Transcriptional regulator, AraC family {ECO:0000313|EMBL:CDY77261.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_5984_curated_20
unknown

Not on your lists

19282..19554
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371F5E6
SCNpilot_cont_500_bf_scaffold_5984_curated_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19720..21372)
DNA (1653bp) protein (551aa)
Na+/H+ antiporter protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I191_AZOC5
Na+/H+ antiporter protein; K03316 monovalent cation:H+ antiporter, CPA1 family
Na+/H+ antiporter protein {ECO:0000313|EMBL:BAF87345.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_22
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21406..22566)
DNA (1161bp) protein (387aa)
Formate dehydrogenase {ECO:0000313|EMBL:EIM94881.1}; EC=1.2.2.1 {ECO:0000313|EMBL:EIM94881.1};; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
formate dehydrogenase; K00122 formate dehydrogenase [EC:1.2.1.2]
Formate dehydrogenase n=1 Tax=Burkholderia terrae BS001 RepID=I5CG63_9BURK
SCNpilot_cont_500_bf_scaffold_5984_curated_23
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22837..23970)
DNA (1134bp) protein (378aa)
oxalate decarboxylase; K01569 oxalate decarboxylase [EC:4.1.1.2]
Oxalate decarboxylase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I194_AZOC5
Oxalate decarboxylase {ECO:0000313|EMBL:BAF87346.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_24
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24500..25045
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I197_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF87347.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25123..26067)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035D3FB6
membrane fusion protein
Membrane fusion protein {ECO:0000313|EMBL:BAF87355.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_26
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26064..26270)
DNA (207bp) protein (69aa)
Conserved hypothetical membrane protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I1C3_AZOC5
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAF87356.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_27
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26290..28293)
DNA (2004bp) protein (668aa)
hypothetical protein n=1 Tax=Xanthobacteraceae bacterium 501b RepID=UPI0003635955
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:BAF87357.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_28
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28533..29051
DNA (519bp) protein (173aa)
AhpC/TSA family protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I1A0_AZOC5
AhpC/TSA family protein
AhpC/TSA family protein {ECO:0000313|EMBL:BAF87348.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_29
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29048..29593
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I1A3_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF87349.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_5984_curated_30
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29623..30420
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003822D39
MFS transporter {ECO:0000313|EMBL:AIB16204.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
ygaY; uncharacterized transporter ygaY
Displaying 30 items

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