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SCNpilot_cont_500_bf_scaffold_2023_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2023_curated_1
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(426..917)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003822BF9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU70831.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
SCNpilot_cont_500_bf_scaffold_2023_curated_2
unknown

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1002..1097
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2023_curated_3
Mycobacterium yongonense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1732..2283
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Mycobacterium RepID=S4ZDE8_9MYCO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP65553.1}; TaxID=1138871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium yongonense 05-1390.;"
SCNpilot_cont_500_bf_scaffold_2023_curated_4
Mycobacterium yongonense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2276..3223
DNA (948bp) protein (316aa)
Uncharacterized protein n=2 Tax=Mycobacterium RepID=S4ZK14_9MYCO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP65552.1}; TaxID=1138871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium yongonense 05-1390.;"
SCNpilot_cont_500_bf_scaffold_2023_curated_5
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3220..4491
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Dietzia alimentaria RepID=UPI00029A3D7E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL90058.1}; TaxID=189918 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain KMS).;"
SCNpilot_cont_500_bf_scaffold_2023_curated_6
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4656..5630
DNA (975bp) protein (325aa)
Phage integrase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9V0Y2_9ACTO
Phage integrase {ECO:0000313|EMBL:EGD41021.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
integrase
SCNpilot_cont_500_bf_scaffold_2023_curated_7
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5803..6771
DNA (969bp) protein (323aa)
AAA ATPase central domain protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVX5_FRASU
ATPase AAA {ECO:0000313|EMBL:KJC64679.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
AAA ATPase
SCNpilot_cont_500_bf_scaffold_2023_curated_8
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6764..9325
DNA (2562bp) protein (854aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVX4_FRASU
Subtilisin family serine protease {ECO:0000313|EMBL:KJC64680.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2023_curated_9
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9441..9635)
DNA (195bp) protein (65aa)
Integrase core domain protein n=3 Tax=Aeromicrobium marinum DSM 15272 RepID=E2S7Z9_9ACTO
Integrase core domain protein {ECO:0000313|EMBL:EFQ84815.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
integrase catalytic subunit; K07497 putative transposase
SCNpilot_cont_500_bf_scaffold_2023_curated_10
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(9661..10731)
DNA (1071bp) protein (357aa)
Putative IS110 family ISLxx2-like transposase n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82QY1_STRAW
IS110 family transposase rbh
Putative IS110 family ISLxx2-like transposase {ECO:0000313|EMBL:BAC68073.1}; TaxID=227882 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
SCNpilot_cont_500_bf_scaffold_2023_curated_11
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11079..12473)
DNA (1395bp) protein (465aa)
Transcriptional regulator (Fragment) n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6JPK2_STRRC
Transcriptional regulator {ECO:0000313|EMBL:EST18764.1}; Flags: Fragment;; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
transposase, IS30 family
SCNpilot_cont_500_bf_scaffold_2023_curated_12
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13113..13406)
DNA (294bp) protein (98aa)
Transposase n=2 Tax=Aeromicrobium marinum DSM 15272 RepID=E2S7Z8_9ACTO
Transposase {ECO:0000313|EMBL:EFQ84814.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
transposase IS3/IS911 family protein
SCNpilot_cont_500_bf_scaffold_2023_curated_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14002..15015)
DNA (1014bp) protein (338aa)
Phosphate regulon sensor protein PhoR {ECO:0000313|EMBL:KJL33415.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KJL33415.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
histidine kinase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3CE4C
Putative histidine kinase
SCNpilot_cont_500_bf_scaffold_2023_curated_14
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15012..15677)
DNA (666bp) protein (222aa)
response regulator n=1 Tax=Curtobacterium sp. B8 RepID=UPI00034C8B75
Response regulator {ECO:0000313|EMBL:KFF60116.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
Putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2023_curated_15
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15681..16355)
DNA (675bp) protein (225aa)
alkaline phosphatase n=1 Tax=Curtobacterium sp. B8 RepID=UPI0003B30AE6
Uncharacterized protein {ECO:0000313|EMBL:EPD86586.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein; K03975 membrane-associated protein
SCNpilot_cont_500_bf_scaffold_2023_curated_16
Arthrobacter phenanthrenivorans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16352..17002)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI000360C911
Uncharacterized protein {ECO:0000313|EMBL:KIC69030.1}; TaxID=361575 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter phenanthrenivorans.;"
PAP2_like_2 multi-domain protein
Displaying 16 items

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