ggKbase home page

SCNpilot_cont_500_bf_scaffold_128_curated

Search features with annotation key words

Displaying items 1-30 of 332 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_128_curated_1
unknown

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_128_curated_2
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(486..1070)
DNA (585bp) protein (195aa)
Transglutaminase family protein cysteine peptidase BTLCP n=3 Tax=Ochrobactrum RepID=C4WGL2_9RHIZ
Transglutaminase family protein cysteine peptidase BTLCP {ECO:0000313|EMBL:EEQ96490.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
transglutaminase family protein cysteine peptidase BTLCP
SCNpilot_cont_500_bf_scaffold_128_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1347..2543
DNA (1197bp) protein (399aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000255|HAMAP-Rule:MF_01690}; Short=SDAP desuccinylase {ECO:0000255|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000255|HAMAP-Rule:MF_01690};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000255|HAMAP-Rule:MF_01690}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Succinyl-diaminopimelate desuccinylase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=DAPE_OCHA4 rbh
SCNpilot_cont_500_bf_scaffold_128_curated_4
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2553..3158
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XGP0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERI14110.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_128_curated_5
Brucella sp. NVSL 07-0026, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3233..3988)
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=520448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. NVSL 07-0026.;"
tRNA pseudouridine synthase A n=248 Tax=Brucella RepID=TRUA_BRUA2 rbh
SCNpilot_cont_500_bf_scaffold_128_curated_6
Brucella microti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3992..4909)
DNA (918bp) protein (306aa)
fmt; methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=568815 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella microti (strain CCM 4915).;"
Methionyl-tRNA formyltransferase n=59 Tax=Brucella RepID=FMT_BRUC2 rbh
SCNpilot_cont_500_bf_scaffold_128_curated_7
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5075..5602)
DNA (528bp) protein (176aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
def; peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=3 Tax=Ochrobactrum intermedium RepID=C4WGL8_9RHIZ
SCNpilot_cont_500_bf_scaffold_128_curated_8
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5724..6953
DNA (1230bp) protein (410aa)
Uncharacterized protein n=2 Tax=Ochrobactrum intermedium RepID=M5JLW3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT47830.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_cont_500_bf_scaffold_128_curated_9
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6993..7301)
DNA (309bp) protein (103aa)
SelT/selW/selH domain-containing protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JU62_9RHIZ
SelT/selW/selH domain-containing protein {ECO:0000313|EMBL:ELT47829.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
Selenoprotein W-related; K07401 selenoprotein W-related protein
SCNpilot_cont_500_bf_scaffold_128_curated_10
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7392..7685
DNA (294bp) protein (98aa)
Excinuclease ABC subunit C n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XHT0_9RHIZ
Excinuclease ABC subunit C {ECO:0000313|EMBL:ERI14118.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_128_curated_11
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7850..9658)
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
Elongation factor 4 n=72 Tax=Brucella RepID=LEPA_BRUC2 rbh
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA
SCNpilot_cont_500_bf_scaffold_128_curated_12
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10008..10994
DNA (987bp) protein (329aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3]
3-beta-hydroxy-delta(5)-steroid dehydrogenase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XGQ1_9RHIZ
3-beta-hydroxy-delta(5)-steroid dehydrogenase {ECO:0000313|EMBL:ERI14120.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCNpilot_cont_500_bf_scaffold_128_curated_13
unknown

Not on your lists

11185..11379
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_128_curated_14
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11424..12230)
DNA (807bp) protein (269aa)
undecaprenyl pyrophosphate phosphatase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
Undecaprenyl-diphosphatase n=1 Tax=Brucella sp. BO2 RepID=E2PJ30_9RHIZ
SCNpilot_cont_500_bf_scaffold_128_curated_15
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12487..13179
DNA (693bp) protein (231aa)
Glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=202 Tax=Brucella RepID=B2SC29_BRUA1
Uncharacterized protein {ECO:0000313|EMBL:ENR18783.1}; TaxID=1160233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis 92/29.;"
SCNpilot_cont_500_bf_scaffold_128_curated_16
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13160..14305
DNA (1146bp) protein (382aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Epoxyqueuosine reductase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYK0_OCHA4
hypothetical protein
SCNpilot_cont_500_bf_scaffold_128_curated_17
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14302..15195
DNA (894bp) protein (298aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYJ9_OCHA4
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABS14053.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_128_curated_18
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15381..16580
DNA (1200bp) protein (400aa)
MFS transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000288E768
MFS transporter {ECO:0000313|EMBL:EXL08500.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_cont_500_bf_scaffold_128_curated_19
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16676..17044
DNA (369bp) protein (123aa)
mgsA; methylglyoxal synthase; K01734 methylglyoxal synthase [EC:4.2.3.3]
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
Methylglyoxal synthase n=5 Tax=Brucella RepID=C9VGJ1_9RHIZ
SCNpilot_cont_500_bf_scaffold_128_curated_20
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17120..18136
DNA (1017bp) protein (339aa)
glk; glucokinase; K00845 glucokinase [EC:2.7.1.2]
Glucokinase {ECO:0000256|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000256|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000256|HAMAP-Rule:MF_00524}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Glucokinase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYJ5_OCHA4
SCNpilot_cont_500_bf_scaffold_128_curated_21
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18309..20144
DNA (1836bp) protein (612aa)
ABC transporter n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1WZW9_9RHIZ
ABC transporter {ECO:0000313|EMBL:ERI14129.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_500_bf_scaffold_128_curated_22
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20141..20989
DNA (849bp) protein (283aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Brucella RepID=D1CZN5_9RHIZ
SCNpilot_cont_500_bf_scaffold_128_curated_23
Brucella neotomae, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21025..21645
DNA (621bp) protein (207aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=520456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellac
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Brucella ceti B1/94 RepID=C9VGJ5_9RHIZ
gpm; phosphoglyceromutase
SCNpilot_cont_500_bf_scaffold_128_curated_trna_1
unknown

Not on your lists

21842..21923
DNA (82bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_128_curated_24
unknown

Not on your lists

comp(22731..22832)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K358_AGRVS
SCNpilot_cont_500_bf_scaffold_128_curated_25
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22868..23053)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Gluconobacter thailandicus NBRC 3255 RepID=M9LWX0_GLUTH
Uncharacterized protein {ECO:0000313|EMBL:GAC88983.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
Mn2+/Fe2+ transporter
SCNpilot_cont_500_bf_scaffold_128_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23166..24677)
DNA (1512bp) protein (504aa)
Amino acid permease-associated region n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BTB5_DESAD
Transporter {ECO:0000313|EMBL:KIZ47279.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
amino acid permease
SCNpilot_cont_500_bf_scaffold_128_curated_27
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24700..26202)
DNA (1503bp) protein (501aa)
Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}; EC=4.1.1.15 {ECO:0000256|RuleBase:RU361171};; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
gadA; glutamate decarboxylase A, PLP-dependent (EC:4.1.1.15); K01580 glutamate decarboxylase [EC:4.1.1.15]
glutamate decarboxylase n=1 Tax=Endozoicomonas elysicola RepID=UPI000369C026
SCNpilot_cont_500_bf_scaffold_128_curated_28
unknown

Not on your lists

26407..26634
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_128_curated_29
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27200..27943)
DNA (744bp) protein (248aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13H10_BURXL
Crp/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABE36629.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
Displaying items 1-30 of 332 in total

View Taxonomy