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SCNpilot_cont_500_bf_scaffold_22_curated

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Displaying items 1-30 of 394 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_22_curated_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1617
DNA (1617bp) protein (539aa)
Outer membrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V692_9RHIZ
Outer membrane protein {ECO:0000313|EMBL:ENN86542.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
outer membrane protein
SCNpilot_cont_500_bf_scaffold_22_curated_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1638..2294
DNA (657bp) protein (219aa)
Invasion associated locus B family protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IW42_METNO
Invasion associated locus B family protein
Invasion associated locus B family protein {ECO:0000313|EMBL:ACL62632.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_22_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2216..2431)
DNA (216bp) protein (72aa)
Transposase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3H9_AGRVS
Transposase {ECO:0000313|EMBL:KEC70829.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
transposase protein
SCNpilot_cont_500_bf_scaffold_22_curated_4
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4356..4838
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5J3R0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ERI34545.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_22_curated_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4872..5528)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TE37_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04725.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
NHL repeat containing protein
SCNpilot_cont_500_bf_scaffold_22_curated_6
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5576..6121
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BPL2_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZP52007.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
SCNpilot_cont_500_bf_scaffold_22_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8416..8805)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YKC3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC68972.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_22_curated_8
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8997..9464)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UG49_ADVKW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK63987.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_500_bf_scaffold_22_curated_9
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10249..11271)
DNA (1023bp) protein (341aa)
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81362.2}; EC=3.6.4.12 {ECO:0000313|EMBL:ABA81362.2};; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA/RNA helicase, superfamily I n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVS2_RHOS4
SCNpilot_cont_500_bf_scaffold_22_curated_10
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11268..11705)
DNA (438bp) protein (146aa)
AsnC family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ANP5_RHIRD
AsnC family transcriptional regulator {ECO:0000313|EMBL:KJF72499.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transcriptional regulator, AsnC family
SCNpilot_cont_500_bf_scaffold_22_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11834..12883
DNA (1050bp) protein (350aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:EMS99559.1}; EC=4.3.1.12 {ECO:0000313|EMBL:EMS99559.1};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Ornithine cyclodeaminase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AG02_RHIRD
ornithine cyclodeaminase (OCD)
SCNpilot_cont_500_bf_scaffold_22_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12901..13827
DNA (927bp) protein (309aa)
amidinotransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035CBD4E
Uncharacterized protein {ECO:0000313|EMBL:EMS99560.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_22_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13900..14862)
DNA (963bp) protein (321aa)
arginase/agmatinase/formiminoglutamase (EC:3.5.3.11)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXA2_9RHIZ
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:EYR83796.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_22_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14979..15671)
DNA (693bp) protein (231aa)
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG32_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83795.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter, inner membrane subunit; K10023 arginine/ornithine transport system permease protein
SCNpilot_cont_500_bf_scaffold_22_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15668..16357)
DNA (690bp) protein (230aa)
ABC-type amino acid transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z107_PARAH
Histidine transport system permease protein HisQ {ECO:0000313|EMBL:EYR83794.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type amino acid transport system, permease component
SCNpilot_cont_500_bf_scaffold_22_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16363..17124)
DNA (762bp) protein (254aa)
Lysine-arginine-ornithine-binding periplasmic protein ArgT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ81_9RHIZ
Lysine-arginine-ornithine-binding periplasmic protein ArgT {ECO:0000313|EMBL:EYR83793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type amino acid transporter, periplasmic binding protein
SCNpilot_cont_500_bf_scaffold_22_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17191..17961)
DNA (771bp) protein (257aa)
histidine/lysine/arginine/ornithine transporter subunit; K10017 histidine transport system ATP-binding protein [EC:3.6.3.21]
Histidine transport ATP-binding protein HisP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZA7_9RHIZ
Histidine transport ATP-binding protein HisP {ECO:0000313|EMBL:EYR83792.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_22_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18205..19125)
DNA (921bp) protein (307aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVM0_9RHIZ
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR83791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_22_curated_19
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19963..21045
DNA (1083bp) protein (361aa)
GntR family transcriptional regulator with aminotransferase domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIB2_9RHIZ
GntR family transcriptional regulator with aminotransferase domain-containing protein {ECO:0000313|EMBL:EHH06293.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_22_curated_20
unknown

Not on your lists

comp(21145..21300)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_22_curated_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21300..21812)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0Z1_PARDP
Uncharacterized protein {ECO:0000313|EMBL:EZQ12695.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_22_curated_22
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21880..22410)
DNA (531bp) protein (177aa)
UPI0003CDFF7C related cluster n=1 Tax=unknown RepID=UPI0003CDFF7C
Uncharacterized protein {ECO:0000313|EMBL:ESW62713.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_22_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22965..23831)
DNA (867bp) protein (289aa)
D-psicose 3-epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UE14_9RHIZ
Strain MEJ076 contig_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ00323.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
dpe; D-psicose 3-epimerase rbh
SCNpilot_cont_500_bf_scaffold_22_curated_24
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23900..24907)
DNA (1008bp) protein (336aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters n=1 Tax=Burkholderia sp. BT03 RepID=J2I150_9BURK
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUC20712.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_22_curated_25
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24904..25908)
DNA (1005bp) protein (335aa)
Sugar ABC transporter, permase protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MIC6_9BURK
sugar ABC transporter, permase protein; K02057 simple sugar transport system permease protein
Sugar ABC transporter, permase protein {ECO:0000313|EMBL:BAO91064.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
SCNpilot_cont_500_bf_scaffold_22_curated_26
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25901..27436)
DNA (1536bp) protein (512aa)
Sugar ABC transporter, ATP-binding protein RbsA {ECO:0000313|EMBL:EEE02540.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EEE02540.1};; TaxID=513051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD1.;"
simple sugar transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Sugar ABC transporter, ATP-binding protein RbsA n=1 Tax=Burkholderia multivorans CGD1 RepID=B9AYF2_9BURK
SCNpilot_cont_500_bf_scaffold_22_curated_27
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27528..28568)
DNA (1041bp) protein (347aa)
Putative substrate binding component of ABC transporter n=1 Tax=Burkholderia sp. YI23 RepID=G8MIC4_9BURK
putative substrate binding component of ABC transporter
Putative substrate binding component of ABC transporter {ECO:0000313|EMBL:BAO91066.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
SCNpilot_cont_500_bf_scaffold_22_curated_28
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28732..29766
DNA (1035bp) protein (345aa)
Transcriptional regulator n=1 Tax=Burkholderia sp. BT03 RepID=J3BF74_9BURK
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EUC20708.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
fruR1; LacI family fructose operon transcriptional repressor; K03435 LacI family transcriptional regulator, fructose operon transcriptional repressor
SCNpilot_cont_500_bf_scaffold_22_curated_29
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30284..30781
DNA (498bp) protein (166aa)
FecI-like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYS6_9BRAD
FecI-like protein {ECO:0000313|EMBL:EAQ34859.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
FecI like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_22_curated_30
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30879..31838
DNA (960bp) protein (320aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRU7_NITWN
FecR protein; K07165 transmembrane sensor
FecR protein {ECO:0000313|EMBL:ABA04994.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying items 1-30 of 394 in total

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