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SCNpilot_cont_500_bf_scaffold_72_curated

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Displaying items 1-30 of 293 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_72_curated_1
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..105
DNA (105bp) protein (35aa)
Transposase n=1 Tax=Sphingobium lactosutens DS20 PF0_9SPHN">RepID=T0HPF0_9SPHN
Transposase {ECO:0000313|EMBL:EQB14887.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
putative transposase
SCNpilot_cont_500_bf_scaffold_72_curated_trna_7
unknown

Not on your lists

comp(1355..1423)
DNA (69bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_72_curated_2
Pseudomonas phage MP1412, Caudovirales, Viruses

Not on your lists

4130..5419
DNA (1290bp) protein (430aa)
Integrase n=1 Tax=Pseudomonas phage MP1412 RepID=I6X828_9CAUD
Integrase {ECO:0000313|EMBL:AFN39597.1}; TaxID=1204517 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Pseudomonas phage MP1412.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_72_curated_3
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5474..6481)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037406B7
DNA recombinase {ECO:0000313|EMBL:ESZ53016.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
integrase
SCNpilot_cont_500_bf_scaffold_72_curated_trna_6
unknown

Not on your lists

comp(6587..6658)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_72_curated_4
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6783..7145)
DNA (363bp) protein (121aa)
Response regulator receiver protein n=259 Tax=Brucellaceae RepID=A6X6Y0_OCHA4
hypothetical protein; K13589 two-component system, cell cycle response regulator CpdR
Uncharacterized protein {ECO:0000313|EMBL:ABY39074.1}; TaxID=470137 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis (strain ATCC 23445 / NCTC 10510).;"
SCNpilot_cont_500_bf_scaffold_72_curated_5
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7531..8421
DNA (891bp) protein (297aa)
N-formylglutamate amidohydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6X9_OCHA4
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EXL03566.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
N-formylglutamate amidohydrolase
SCNpilot_cont_500_bf_scaffold_72_curated_6
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8655..9437
DNA (783bp) protein (261aa)
Histidinol-phosphate phosphatase n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JJX7_9RHIZ
Histidinol-phosphate phosphatase {ECO:0000313|EMBL:ELT46572.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
histidinol-phosphate phosphatase
SCNpilot_cont_500_bf_scaffold_72_curated_7
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9453..10442)
DNA (990bp) protein (330aa)
Lysophospholipase L2 {ECO:0000313|EMBL:EFM60081.1}; EC=3.1.1.5 {ECO:0000313|EMBL:EFM60081.1};; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
Lysophospholipase; K01048 lysophospholipase [EC:3.1.1.5]
Lysophospholipase L2 n=1 Tax=Brucella sp. BO2 RepID=E2PLT8_9RHIZ
SCNpilot_cont_500_bf_scaffold_72_curated_8
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10641..11030)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Ochrobactrum intermedium RepID=M5JJP9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ94145.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_72_curated_9
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11371..11841
DNA (471bp) protein (157aa)
Small heat shock protein hspD n=3 Tax=Ochrobactrum RepID=C4WPN7_9RHIZ
Heat-shock protein {ECO:0000313|EMBL:ERI15941.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
heat shock protein Hsp20; K04080 molecular chaperone IbpA
SCNpilot_cont_500_bf_scaffold_72_curated_10
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11909..12958)
DNA (1050bp) protein (350aa)
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
threonine aldolase, low-specificity; K01620 threonine aldolase [EC:4.1.2.5]
Threonine aldolase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3I0N2_9RHIZ
SCNpilot_cont_500_bf_scaffold_72_curated_11
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13468..18243
DNA (4776bp) protein (1592aa)
glutamate synthase; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YVE2_9RHIZ
Glutamate synthase {ECO:0000313|EMBL:ERI16052.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCNpilot_cont_500_bf_scaffold_72_curated_12
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18381..19835
DNA (1455bp) protein (485aa)
Dihydropyrimidine dehydrogenase subunit A {ECO:0000313|EMBL:ERM00201.1}; EC=1.4.1.13 {ECO:0000313|EMBL:ERM00201.1};; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
gltD; glutamate synthase subunit beta; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase, NADH/NADPH, small subunit n=3 Tax=Ochrobactrum intermedium RepID=C4WPN4_9RHIZ
SCNpilot_cont_500_bf_scaffold_72_curated_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19946..21133)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Ochrobactrum anthropi RepID=UPI000289E829
Uncharacterized protein {ECO:0000313|EMBL:EXL03557.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein; K09795 hypothetical protein
SCNpilot_cont_500_bf_scaffold_72_curated_14
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21230..22414)
DNA (1185bp) protein (395aa)
Lytic transglycosylase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XNB2_9RHIZ
Lytic murein transglycosylase {ECO:0000313|EMBL:ELT46359.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
lytic murein transglycosylase
SCNpilot_cont_500_bf_scaffold_72_curated_15
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22785..23678
DNA (894bp) protein (298aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP-glucose-1-phosphate uridylyltransferase n=2 Tax=Ochrobactrum intermedium RepID=C4WP73_9RHIZ
SCNpilot_cont_500_bf_scaffold_72_curated_16
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23750..25552)
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6W6_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:EXL03553.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_72_curated_17
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25704..26705
DNA (1002bp) protein (334aa)
KpsF/GutQ family protein n=1 Tax=Ochrobactrum anthropi RepID=UPI000287B5B9
KpsF/GutQ family protein
D-arabinose 5-phosphate {ECO:0000313|EMBL:EXL03552.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_500_bf_scaffold_72_curated_18
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26762..27220)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Brucella suis F8/06-3 RepID=N8KJ78_BRUSS
hypothetical protein; K07340 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFM56033.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
SCNpilot_cont_500_bf_scaffold_72_curated_19
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27227..28213)
DNA (987bp) protein (329aa)
Membrane protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XM82_9RHIZ
Membrane protein {ECO:0000313|EMBL:ERI16040.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
band 7 protein
SCNpilot_cont_500_bf_scaffold_72_curated_20
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28290..29306)
DNA (1017bp) protein (339aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hemH; ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KE15_9RHIZ
SCNpilot_cont_500_bf_scaffold_72_curated_21
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29377..29754)
DNA (378bp) protein (126aa)
Membrane protein n=3 Tax=Ochrobactrum RepID=U1XNA3_9RHIZ
Membrane protein {ECO:0000313|EMBL:ERI16038.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
lipoprotein Omp10
SCNpilot_cont_500_bf_scaffold_72_curated_22
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29985..31430)
DNA (1446bp) protein (482aa)
homospermidine synthase; K00808 homospermidine synthase [EC:2.5.1.44]
Homospermidine synthase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YZD6_9RHIZ
Homospermidine synthase {ECO:0000313|EMBL:ERI16036.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCNpilot_cont_500_bf_scaffold_72_curated_23
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31676..32281)
DNA (606bp) protein (202aa)
4-amino-4-deoxychorismate lyase; K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
Uncharacterized protein n=1 Tax=Brucella sp. 63/311 RepID=N8FVK0_9RHIZ
4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EEY27523.1}; TaxID=520489 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis bv. 5 str. 513.;"
SCNpilot_cont_500_bf_scaffold_72_curated_24
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32290..33450)
DNA (1161bp) protein (387aa)
para-aminobenzoate synthase component I; K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
Para-aminobenzoate synthase component I n=2 Tax=Brucella RepID=D1D229_9RHIZ
Para-aminobenzoate synthase component I {ECO:0000313|EMBL:EEZ34572.1}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
SCNpilot_cont_500_bf_scaffold_72_curated_25
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33458..35344)
DNA (1887bp) protein (629aa)
pepF/M3 family oligoendopeptidase; K08602 oligoendopeptidase F [EC:3.4.24.-]
Oligoendopeptidase, pepF/M3 family n=3 Tax=Ochrobactrum intermedium RepID=C4WP59_9RHIZ
Oligoendopeptidase F {ECO:0000313|EMBL:ELT47008.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
SCNpilot_cont_500_bf_scaffold_72_curated_26
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35724..37166
DNA (1443bp) protein (481aa)
Sigma-54 dependent DNA-binding response regulator n=2 Tax=Brucella RepID=E2PLJ1_9RHIZ
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:EFM60083.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
sigma-54 dependent DNA-binding response regulator
SCNpilot_cont_500_bf_scaffold_72_curated_27
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37415..39247
DNA (1833bp) protein (611aa)
Uncharacterized protein n=4 Tax=Brucella RepID=N8H5C2_9RHIZ
ATP/GTP-binding protein
ATP/GTP-binding site motif A (P-loop) {ECO:0000313|EMBL:ADZ67335.1}; TaxID=941967 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella melitensis (strain M28).;"
SCNpilot_cont_500_bf_scaffold_72_curated_28
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39260..39895)
DNA (636bp) protein (212aa)
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:EMG53433.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EMG53433.1};; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JMB4_9RHIZ
Displaying items 1-30 of 293 in total

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