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SCNpilot_cont_500_bf_scaffold_2381_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2381_curated_1
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..934
DNA (933bp) protein (311aa)
Putative transcriptional regulator (Winged helix domain) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z447_AZOL4
DNA-binding protein {ECO:0000313|EMBL:KJR65996.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative transcriptional regulator (winged helix domain)
SCNpilot_cont_500_bf_scaffold_2381_curated_2
Yersinia frederiksenii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1002..1379
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T5A7_YERIN
Phenazine antibiotic resistance protein {ECO:0000256|PIRNR:PIRNR039020}; TaxID=349966 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia frederiksenii ATCC 33641.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_500_bf_scaffold_2381_curated_3
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1376..1849
DNA (474bp) protein (158aa)
UPI0003D01867 related cluster n=1 Tax=unknown RepID=UPI0003D01867
UPF0310 protein X734_22365 {ECO:0000256|HAMAP-Rule:MF_00771}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Protein of unknown function DUF55
SCNpilot_cont_500_bf_scaffold_2381_curated_4
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1746..2291)
DNA (546bp) protein (182aa)
UPI0003CE52F6 related cluster n=1 Tax=unknown RepID=UPI0003CE52F6
Uncharacterized protein {ECO:0000313|EMBL:ESW89886.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_curated_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2389..2646)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV05340.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_curated_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2887..3168)
DNA (282bp) protein (94aa)
Integration host factor subunit beta n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C116_9RHIZ
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_cont_500_bf_scaffold_2381_curated_7
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3250..4227)
DNA (978bp) protein (326aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGX4_MESAW
signal peptide peptidase SppA, 36K type
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:AGB44256.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_2381_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4431..5210
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBC08F
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59281.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_cont_500_bf_scaffold_2381_curated_9
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5197..5865
DNA (669bp) protein (223aa)
UPI0003D06D3E related cluster n=1 Tax=unknown RepID=UPI0003D06D3E
Uncharacterized protein {ECO:0000313|EMBL:ESZ22220.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_cont_500_bf_scaffold_2381_curated_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5867..6667
DNA (801bp) protein (267aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4U4_9RHIZ
ABC transporter {ECO:0000313|EMBL:EHH13179.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_500_bf_scaffold_2381_curated_11
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7015..8271
DNA (1257bp) protein (419aa)
ABC-type branched-chain amino acid transport systems n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W5P1_MAGSA
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_500_bf_scaffold_2381_curated_12
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8338..9210
DNA (873bp) protein (291aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P083_AZOS1
livH; branched-chain amino acid transport system permease protein; K01997 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_500_bf_scaffold_2381_curated_13
unknown

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comp(9428..9523)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2381_curated_14
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9781..10143
DNA (363bp) protein (121aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P084_AZOS1
livM; branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KJR63416.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_500_bf_scaffold_2381_curated_15
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10140..10880
DNA (741bp) protein (247aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4G3_MAGSA
ABC-type branched-chain amino acid transport systems, ATPase component; K01995 branched-chain amino acid transport system ATP-binding protein
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:BAE51262.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_500_bf_scaffold_2381_curated_16
bacterium YEK0313, Bacteria

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10880..11584
DNA (705bp) protein (235aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAW7_9RHOB
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ10329.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative branched-chain amino acid ABC transporter, ATP-binding component (livF-like); K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2381_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11596..14745)
DNA (3150bp) protein (1050aa)
RND multidrug efflux transporter n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XW94_RHIRD
RND multidrug efflux transporter {ECO:0000313|EMBL:EHH05379.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_cont_500_bf_scaffold_2381_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14753..15718)
DNA (966bp) protein (322aa)
Putative component of multidrug efflux pump, acrB/acrD/acrF family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PYA0_9RHIZ
Putative component of multidrug efflux pump, acrB/acrD/acrF family
RND transporter {ECO:0000313|EMBL:KAJ32296.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_2381_curated_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16093..17499)
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FA4CAA
Inosine-uridine nucleoside N-ribohydrolase
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:AGB44265.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_2381_curated_20
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17640..17897
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C107_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75509.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_curated_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17974..18438)
DNA (465bp) protein (155aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
nitrogen regulatory protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000379493B
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:EKF44404.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_500_bf_scaffold_2381_curated_22
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18513..19097)
DNA (585bp) protein (195aa)
Sigma-54 modulation protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C110_9RHIZ
Sigma-54 modulation protein {ECO:0000313|EMBL:EIM75512.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
sigma-54 modulation protein
SCNpilot_cont_500_bf_scaffold_2381_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19457..20956)
DNA (1500bp) protein (500aa)
UPI0003D06596 related cluster n=1 Tax=unknown RepID=UPI0003D06596
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor
SCNpilot_cont_500_bf_scaffold_2381_curated_24
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21129..21653)
DNA (525bp) protein (175aa)
HAD family hydrolase n=3 Tax=Ochrobactrum RepID=C4WLS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG68649.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
HAD family hydrolase
SCNpilot_cont_500_bf_scaffold_2381_curated_25
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21670..22509)
DNA (840bp) protein (280aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ49_9RHIZ
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFG68651.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_500_bf_scaffold_2381_curated_26
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22506..23333)
DNA (828bp) protein (276aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5A6_OCHA4
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS16410.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_2381_curated_27
Enterobacter sp. Ag1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23390..23527)
DNA (138bp) protein (46aa)
Family 1 extracellular solute-binding protein n=1 Tax=Enterobacter sp. Ag1 RepID=J0M5G4_9ENTR
Family 1 extracellular solute-binding protein {ECO:0000313|EMBL:EJF29124.1}; TaxID=1202448 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. Ag1.;"
extracellular solute-binding protein
Displaying 27 items

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